PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013607247.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 588aa    MW: 65562.8 Da    PI: 6.6951
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013607247.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.58e-14279338155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k+++
  XP_013607247.1 279 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWN 338
                     57*******************666664478446**********99*************97 PP
2AP249.69.7e-16381432155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_013607247.1 381 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 432
                     57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-16279347IPR016177DNA-binding domain
CDDcd000187.66E-20279348No hitNo description
PfamPF008478.8E-11279338IPR001471AP2/ERF domain
PROSITE profilePS5103218.558280346IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-14280346IPR001471AP2/ERF domain
SMARTSM003802.1E-24280352IPR001471AP2/ERF domain
PRINTSPR003675.4E-6281292IPR001471AP2/ERF domain
CDDcd000184.03E-11381440No hitNo description
SuperFamilySSF541711.11E-17381441IPR016177DNA-binding domain
PfamPF008474.1E-10381432IPR001471AP2/ERF domain
PROSITE profilePS5103219.111382440IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-18382440IPR001471AP2/ERF domain
SMARTSM003807.9E-31382446IPR001471AP2/ERF domain
PRINTSPR003675.4E-6422442IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MAPMTNWLTF SLSPMEMLRS SDDQSQFVSY DASSAASSSP YLLDNFYGWT NQKPQELFFK  60
EEAQLAAAAS MADSTILTTF VDPQSHSQSH IPKLEDFLGG DVRYSDNSQS ETQDSSSLSQ  120
IYDPRHHQNQ NQNQNQNQNQ NQTGFYSDHN PDFNKTMAGF QTAFSTNSGS EVDDSASIAR  180
TLLAGEYLGH VVESSGPGLG FHGGASTGGA LSLGVNINNN ANQRSSSDNN QIVEHHYNVE  240
RINNNSEKRD SEKEKPVVAV ETSDCSNKKV ADTFGQRTSI YRGVTRHRWT GRYEAHLWDN  300
SCRREGQARK GRQVYLGGYD KEDKAARAYD LAALKYWNAA ATTNFPITNY SKELEEMKHM  360
TKLEFIASLR RKSSGFSRGA SIYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFATEEEAA  420
EAYDIAAIKF RGINAVTNFE MNRYDVEAIM KSALPIGGAA KRLKLSLESA ASAEQKPNVG  480
HHQQQLHHLQ QQQQQLQLQS SHNNSSINFA LCPNSDVQSQ MIPCGIPFDA AALYHHQQQQ  540
QQQQNFFQHF HAASDSTASN NNNSNVQGSM GLMAPNAAEF FLWPNQSY
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013607247.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5856830.0AY585683.1 Arabidopsis thaliana clone at5g10510 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607247.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A0D3EGF30.0A0A0D3EGF3_BRAOL; Uncharacterized protein
STRINGBo9g171990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]