PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013607241.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 299aa    MW: 33579.8 Da    PI: 7.953
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013607241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.61.2e-3762120260
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                     +++ ++cprC+s+ntkfCyynnysl+qPry+Ck+CrryWt+GG+lrnvPvGgg+rknkk
  XP_013607241.1  62 PQELRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 120
                     67889****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2761118IPR003851Zinc finger, Dof-type
PfamPF027014.5E-3364120IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.44466120IPR003851Zinc finger, Dof-type
PROSITE patternPS01361068104IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDHHHYTHHD HDQYQHHQMT ITNNNPYNTI ITTPPPRTTT VDSTTMIMDA EKKMMTTMTS  60
RPQELRNCPR CNSSNTKFCY YNNYSLAQPR YLCKSCRRYW TEGGSLRNVP VGGGSRKNKK  120
LPLLQPNSSS SSPAKNLPDL NPPFAFTSSS STSTSSNPSK SAHRNNNDLS LSFSYPTMQE  180
DKRAQGHYGH FTEQAMSGGQ NCLFAAPMGM IQFRQDYGHD HNNTDIGFSL DSNKVDSNNQ  240
NNLLVNGGGS KLMFSYGDRD EHHHDHERHD DGNKKRESGS SNELWSGIIL GGDSGGPTW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013607241.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607240.10.0PREDICTED: dof zinc finger protein DOF4.1
RefseqXP_013607241.10.0PREDICTED: dof zinc finger protein DOF4.1
SwissprotQ9M1611e-131DOF41_ARATH; Dof zinc finger protein DOF4.1
TrEMBLA0A3P6E8880.0A0A3P6E888_BRAOL; Uncharacterized protein
STRINGBo9g003870.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00940.11e-105Dof family protein