PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013607233.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 390aa    MW: 44513.4 Da    PI: 8.038
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013607233.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-1079115339
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 
                     ++k  rr+++NReAA++sR+RKka++++Le+   +L 
  XP_013607233.1  79 PDKIKRRLAQNREAAKKSRLRKKAYVQQLETSRLKLI 115
                     57899*************************8655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.7E-775124No hitNo description
SMARTSM003382.0E-577140IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.63479121IPR004827Basic-leucine zipper domain
PfamPF001708.8E-880110IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.48E-681116No hitNo description
CDDcd147081.20E-2181132No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
PfamPF141446.0E-29192267IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MNSTSTHFVP PRRVNIYEPL HQFGMWGETF KSNIGNGNIN TPSHIIIPNN QKLDNNLSED  60
TSHGTPLIFD QETSTSRHPD KIKRRLAQNR EAAKKSRLRK KAYVQQLETS RLKLIQLEQE  120
LDRARQQGFY VGNGIDTSTT TSLGFSENMN PGLYQEQGSI LDKNQNLNVK IKTGIAAFEM  180
EYGQWIEEQN KQICELRTVL QGHVGDVELR LLVEIAMKHY FDLFRMKSAA AKEDVFFVMS  240
GMWRTSAERF FLWIGGFRPS DLIKVLLPHF DVMTDQQILD VCNLRQSCQQ AEDALSQGME  300
KLQHTLADCV AGGRLGEGNY IPQVNSAMER AEASVSFVNQ ADHLRHETLQ QMDRILTTRQ  360
AARGLLALGE YFQRLRALSS SWATRHREPT
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013607233.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5320570.0FJ532057.1 Brassica rapa subsp. pekinensis TGA2 protein (TGA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607232.10.0PREDICTED: transcription factor TGA1-like isoform X1
RefseqXP_013607233.10.0PREDICTED: transcription factor TGA1-like isoform X1
SwissprotQ392370.0TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A0D3E2A60.0A0A0D3E2A6_BRAOL; Uncharacterized protein
STRINGBo9g018570.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.50.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]