PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013607157.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 306aa MW: 33431.1 Da PI: 7.4646

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013607157.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.3	1.2e-06	182	226	18	62
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +rsR RK+++i+eLe++v L+a +L ++ +l ++ a+l e XP_013607157.1 182 QRSRVRKLQYIAELERRVSMLQAVEADLSVRVASLLQTRATLSLE 226 79***************************9999999998888655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14703	5.50E-15	176	221	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.8E-6	182	234	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MSRPGQLPPR CPIPKKLSLN PYADTFYSSS SPVESYISHH HKSSSPTQDS TLEEQPAWLD 60 ELLGDKTDCG GPSPLRRSAS DSVVLLGDIS ADFAGFNQSE EDEESLTSEA CGELESACVY 120 GPNSPRARNS SSFSGSPIAS AFSDYGSQKA PQNAVDTVKG SICHPHEADN ACGSNAKRNP 180 GQRSRVRKLQ YIAELERRVS MLQAVEADLS VRVASLLQTR ATLSLENSQM KQQMAILKQD 240 KLIREGEYLL LKKEAQRLNS RLRNFGSSNN NNRLARSYSA GSSIGPRTGS SHLDWNLLDL 300 TKLNLN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013607157.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY099881	1e-131	AY099881.1 Arabidopsis thaliana unknown protein (At5g04840) mRNA, complete cds.
GenBank	BT008710	1e-131	BT008710.1 Arabidopsis thaliana At5g04840 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013607157.1	0.0	PREDICTED: basic leucine zipper 2
TrEMBL	A0A0D3EHW0	0.0	A0A0D3EHW0_BRAOL; Uncharacterized protein
STRING	Bo9g179040.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13642	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	2e-18	bZIP family protein