PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013607036.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 330aa    MW: 36612.6 Da    PI: 6.584
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013607036.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18242276135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  XP_013607036.1 242 CSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRL 276
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.5E-995330IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.215236272IPR000679Zinc finger, GATA-type
SMARTSM004018.9E-17236290IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-14238299No hitNo description
Gene3DG3DSA:3.30.50.104.7E-15240274IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.00E-14241289No hitNo description
PROSITE patternPS003440242267IPR000679Zinc finger, GATA-type
PfamPF003201.3E-16242276IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MERVEAALKS SVRKDMAFKT TLPVYEDFLA VTTAEDFSVD DFFDLSKDDV FTEEEAEPKT  60
HQEMLHVSSE EPQDKGDALR RSNDGFGSLP PSELSVPTDE LAELEWLSHF VEDSFTEYSA  120
PNLTGTPTEK PAWLAGDRKH PVTPVTHDSC FKSPVPSKSR TKRNRNGTNF WSLGSSSSSG  180
PSSSNSTSSS SSDPSNTWFS GAELLEPVFT SEKPPVHKKH KKRSAESVCS GQLLLQQPSR  240
RCSHCGVQKT PQWRAGPMGA KTLCNACGVR YKSGRLLPEY RPACSPTFSS ELHSNHHRKV  300
MEMRRKKEPT DDNETGLNQL VQSPQAVPSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013607036.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892250.0AC189225.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB011P07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607034.10.0PREDICTED: GATA transcription factor 5
RefseqXP_013607035.10.0PREDICTED: GATA transcription factor 5
RefseqXP_013607036.10.0PREDICTED: GATA transcription factor 5
RefseqXP_013688521.10.0GATA transcription factor 5-like
RefseqXP_013688522.10.0GATA transcription factor 5-like
RefseqXP_022564778.10.0GATA transcription factor 5-like
SwissprotQ9FH571e-171GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A0D3E2Q20.0A0A0D3E2Q2_BRAOL; GATA transcription factor
STRINGBo9g022010.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-166GATA transcription factor 5