PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013607034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 330aa MW: 36612.6 Da PI: 6.584 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.2 | 1.1e-18 | 242 | 276 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l XP_013607034.1 242 CSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRL 276 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.5E-99 | 5 | 330 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 12.215 | 236 | 272 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 8.9E-17 | 236 | 290 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.71E-14 | 238 | 299 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.7E-15 | 240 | 274 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.00E-14 | 241 | 289 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 242 | 267 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.3E-16 | 242 | 276 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MERVEAALKS SVRKDMAFKT TLPVYEDFLA VTTAEDFSVD DFFDLSKDDV FTEEEAEPKT 60 HQEMLHVSSE EPQDKGDALR RSNDGFGSLP PSELSVPTDE LAELEWLSHF VEDSFTEYSA 120 PNLTGTPTEK PAWLAGDRKH PVTPVTHDSC FKSPVPSKSR TKRNRNGTNF WSLGSSSSSG 180 PSSSNSTSSS SSDPSNTWFS GAELLEPVFT SEKPPVHKKH KKRSAESVCS GQLLLQQPSR 240 RCSHCGVQKT PQWRAGPMGA KTLCNACGVR YKSGRLLPEY RPACSPTFSS ELHSNHHRKV 300 MEMRRKKEPT DDNETGLNQL VQSPQAVPSY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013607034.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189225 | 0.0 | AC189225.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB011P07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013607034.1 | 0.0 | PREDICTED: GATA transcription factor 5 | ||||
Refseq | XP_013607035.1 | 0.0 | PREDICTED: GATA transcription factor 5 | ||||
Refseq | XP_013607036.1 | 0.0 | PREDICTED: GATA transcription factor 5 | ||||
Refseq | XP_013688521.1 | 0.0 | GATA transcription factor 5-like | ||||
Refseq | XP_013688522.1 | 0.0 | GATA transcription factor 5-like | ||||
Refseq | XP_022564778.1 | 0.0 | GATA transcription factor 5-like | ||||
Swissprot | Q9FH57 | 1e-171 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A0D3E2Q2 | 0.0 | A0A0D3E2Q2_BRAOL; GATA transcription factor | ||||
STRING | Bo9g022010.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3698 | 25 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 1e-166 | GATA transcription factor 5 |