PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013607027.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 294aa    MW: 33152.3 Da    PI: 6.4547
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013607027.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-072442762254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp+++++++L +++gL+ +q+ +WF N+R +
  XP_013607027.1 244 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 276
                     58*****************************87 PP
2ELK22.72.3e-08197218122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK +L++++++++ ++++E++
  XP_013607027.1 197 ELKLELKQGFKSRIEDVREEIM 218
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-182973IPR005540KNOX1
PfamPF037906.5E-163172IPR005540KNOX1
SMARTSM012565.1E-2583138IPR005541KNOX2
PfamPF037912.8E-1987137IPR005541KNOX2
PROSITE profilePS512139.202197217IPR005539ELK domain
PROSITE profilePS5007111.823217280IPR001356Homeobox domain
SMARTSM003896.3E-11219284IPR001356Homeobox domain
SuperFamilySSF466892.48E-16219283IPR009057Homeodomain-like
CDDcd000863.02E-12220281No hitNo description
Gene3DG3DSA:1.10.10.605.0E-25224282IPR009057Homeodomain-like
PfamPF059203.3E-18237276IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MQEAALGMIG ATVGGGGDED AAVVAEQNRQ MKGEIATHPM YDQLLAAHVA CLRVATPIDQ  60
LPIIEAQLSH SHHLLRSYAS TAVGFSHHDR QELDNFLAQY VMVLCSFKEQ LQQHVRVHAV  120
EAVMACREIE NNLHSLTGAT LGEGSGATMS EDEDDLHMDF SSDNSGVDFS GGHDMTGFGP  180
LLPTESERSL MERVRQELKL ELKQGFKSRI EDVREEIMRK RRAGKLPGDT TTVLKNWWQQ  240
HCKWPYPTED DKAKLVEETG LQLKQINNWF INQRKRNWHN NSHSLTSLKS KRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In roots, stems and cotyledons of one-week old seedlings. In mature plants, in young leaves from first level below flowers as well as in flower buds and open flowers.
Functional Description ? help Back to Top
Source Description
UniProtPossible developmental regulator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013607027.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding; up to 7-fold increase.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ290730.0Z29073.1 B.napus hd1 mRNA for homeodomain-containing protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607027.10.0PREDICTED: homeobox protein HD1
SwissprotP466060.0HD1_BRANA; Homeobox protein HD1
TrEMBLA0A0D3E3T30.0A0A0D3E3T3_BRAOL; Uncharacterized protein
STRINGBo9g028790.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.10.0KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Boivin R,Hamel F,Beauseigle D,Bellemare G
    Stage-specific transcription of the homebox gene Bnhd1 in young tissues and flowers of Brassica napus.
    Biochim. Biophys. Acta, 1994. 1219(1): p. 201-4
    [PMID:7916213]