PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013607014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 858aa MW: 95946.7 Da PI: 5.5418 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 6.1e-18 | 37 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEde+l +av+ + g++Wk+Ia+ + Rt+ qc +rwqk+l XP_013607014.1 37 RGQWTAEEDEILTKAVHSFKGKNWKKIAEFFK-DRTDVQCLHRWQKVL 83 89*****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 63 | 6.1e-20 | 89 | 135 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde +v++++++G++ W+tIar ++ gR +kqc++rw+++l XP_013607014.1 89 KGPWTKEEDEMIVQLIQKYGPKKWSTIARFLP-GRIGKQCRERWHNHL 135 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 45.6 | 1.6e-14 | 141 | 183 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ll++a++ +G++ W+ + ++ gR+++ +k++w+ XP_013607014.1 141 KEAWTQEEELLLIRAHQIYGNR-WAELTKFLP-GRSDNGIKNHWH 183 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.673 | 32 | 83 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-15 | 36 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 37 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 38 | 91 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.3E-15 | 38 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-13 | 40 | 83 | No hit | No description |
PROSITE profile | PS51294 | 32.297 | 84 | 139 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.87E-32 | 86 | 182 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-19 | 88 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-18 | 89 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.98E-17 | 91 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 92 | 139 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.1E-20 | 140 | 190 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.591 | 140 | 190 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-13 | 140 | 188 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-13 | 141 | 183 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.87E-11 | 143 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 858 aa Download sequence Send to blast |
MESECTTTSS TPPQRVTEGN PKSRQGRTSG PARRSTRGQW TAEEDEILTK AVHSFKGKNW 60 KKIAEFFKDR TDVQCLHRWQ KVLNPELVKG PWTKEEDEMI VQLIQKYGPK KWSTIARFLP 120 GRIGKQCRER WHNHLNPAIN KEAWTQEEEL LLIRAHQIYG NRWAELTKFL PGRSDNGIKN 180 HWHSSVKKKL DSYMSSGLLD QYQAMPLAPY DRNSFMQSTM DGSGCVSGQA EQEIEHGIMN 240 MGQHFHPCEN SQYYYPELED ISVSISEASY DMEDCSQFPD HNVSASTSQD YQFDFQDLSD 300 ISLEMSQNMS GLPMTYTKER KEASLGAPNS KSNIDVAAYT NTSETECCRV LFLDQESEGV 360 SVSRSSTQEP HEVLCASASD SQVSEATKSP MKSSSSMSIA TPASGKETLR PAPLIITPDK 420 YSKKSSGLIC HSFETNENGS FICINDPSTS TCVDEGPNNS TEDYHLNDSK KLVPVNDFAS 480 LAEAKPHSLP KHETNMSSEQ HHEDMGASSS SLCFPSLDLP AFNDPVHDYS PLGIRKLLMS 540 SMACMSPLRL WESPTGKKTL VGAKSILRKR TRDLLTPLSE KRSDKKLETD IAASLAKDFS 600 RLDVMFDESE NQESISGMPE ETMDVSKSLV QPQQTCLEAN VQHAQSFSGV LSESNTNKQV 660 LSPPGQSVTK AEKTQVSTPR NHLQRTLMAT SNKEQHSPSS LCLVINSPSR ARNTESHLAN 720 NETNNENFSI FCGTPFRRGL ESPSAWKSPF YVNSLLPSPR FDTDITIEDM GYIFSPGERS 780 YESIGMFTQR HEHTSAFAAF NAMEISLSPS TDDAKKMKDL DKENNDPLMA EGRVLDFNDC 840 ESPTKXTEEV SSYLLKGM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-68 | 37 | 190 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-68 | 37 | 190 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the root quiescent center (PubMed:15937229). Accumulates in division zone of primary root tips and emerging lateral roots. Also present in floral organs in young flower buds. Weakly and uniformly present in the developing embryo and maternal tissues (PubMed:17287251). Expressed specifically in proliferating stage of leaves (PubMed:26069325). {ECO:0000269|PubMed:15937229, ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:26069325}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, cotyledons and leaves, especially in vascular tissues, and in flowers. {ECO:0000269|PubMed:17287251}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669, PubMed:25806785). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:25806785}.; FUNCTION: Involved in transcription regulation during induced endoreduplication at the powdery mildew (e.g. G.orontii) infection site, thus promoting G.orontii growth and reproduction. {ECO:0000269|PubMed:20018666}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013607014.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (SA) (PubMed:16463103). Expressed in a cell cycle-dependent manner, with highest levels 2 hours before the peak of mitotic index in cells synchronized by aphidicolin. Activated by CYCB1 (PubMed:17287251). Accumulates at powdery mildew (e.g. G.orontii) infected cells. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17287251}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF371975 | 0.0 | AF371975.2 Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4 (MYB3R4) mRNA, complete cds. | |||
GenBank | AY519650 | 0.0 | AY519650.1 Arabidopsis thaliana MYB transcription factor (At5g11510) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013607014.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: myb-related protein 3R-1 | ||||
Refseq | XP_022564903.1 | 0.0 | LOW QUALITY PROTEIN: transcription factor MYB3R-4-like | ||||
Swissprot | Q94FL9 | 0.0 | MB3R4_ARATH; Transcription factor MYB3R-4 | ||||
TrEMBL | A0A0D3EG67 | 0.0 | A0A0D3EG67_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g171130.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13213 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 0.0 | myb domain protein 3r-4 |
Publications ? help Back to Top | |||
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