PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013606989.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 387aa MW: 43342.5 Da PI: 6.2483

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013606989.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.2	9e-34	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFv+av+qLGG ekAtPkti+++m+++gLtl+h+kSHLQkYRl XP_013606989.1 45 KPRLKWTPDLHERFVDAVNQLGGGEKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.38	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.3E-32	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.53E-17	44	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-10	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	2.9E-15	146	186	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MYYHNQHQGK SILSSSRMSI PSERHPFLRG NGPGDSGLIL STDAKPRLKW TPDLHERFVD 60 AVNQLGGGEK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQANSS LNKTSVMTMV 120 EENTPEADES HSESLSIGPQ PSMNLPISDA LQMQIEVQRR LHEQLELRIE AQGKYLQAIL 180 EKAQETLGRQ NLGPAGIEAT KAQLSELVSK VSSEYPDASF LELQNLHHQQ MQTAYPPPNS 240 SLESCLTSSE GNQKAPKMLE NGLGLRTYLG DSSSEQKVIM EEPFFHRMEL TWAAEEEEEG 300 LRENNNRPYL SAMEPRNSTS RRSPGRLSIG VGLQELRGGY TEERYRENGG DCKVETRTST 360 ALDLNTHEET YGTTRPKQFD LNGFSWS

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MYYHNQHQGK SILSSSRMSI PSERHPFLRG NGPGDSGLIL STDAKPRLKW TPDLHERFVD  60
AVNQLGGGEK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQANSS LNKTSVMTMV  120
EENTPEADES HSESLSIGPQ PSMNLPISDA LQMQIEVQRR LHEQLELRIE AQGKYLQAIL  180
EKAQETLGRQ NLGPAGIEAT KAQLSELVSK VSSEYPDASF LELQNLHHQQ MQTAYPPPNS  240
SLESCLTSSE GNQKAPKMLE NGLGLRTYLG DSSSEQKVIM EEPFFHRMEL TWAAEEEEEG  300
LRENNNRPYL SAMEPRNSTS RRSPGRLSIG VGLQELRGGY TEERYRENGG DCKVETRTST  360
ALDLNTHEET YGTTRPKQFD LNGFSWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269\|PubMed:15923329}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013606989.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF291817	0.0	AF291817.1 Arabidopsis thaliana MYR1 (MYR1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013606989.1	0.0	PREDICTED: myb family transcription factor APL isoform X3
Swissprot	Q9FK47	0.0	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A0D3EEI1	0.0	A0A0D3EEI1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6ELM8	0.0	A0A3P6ELM8_BRAOL; Uncharacterized protein
STRING	Bo9g157350.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.3	0.0	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]