PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013606937.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 608aa MW: 68031.5 Da PI: 4.9762 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.8 | 7e-12 | 418 | 464 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h Er+ R+++N++f +Lr+++P + K +K++iL +++Y+++Lq XP_013606937.1 418 NHALSERKCREKLNDRFMTLRSIIPLiS------KIDKVSILDDTIDYLQELQ 464 79999*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.0E-49 | 13 | 206 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.025 | 414 | 463 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-17 | 418 | 485 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-16 | 418 | 481 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.71E-14 | 418 | 468 | No hit | No description |
Pfam | PF00010 | 1.9E-9 | 418 | 464 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-14 | 420 | 469 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MATGENRTVQ ENLKKHLAVS VRNIQWSYGI FWSISASQPG VLEWGDGYYN GDIKTRKTIQ 60 AVEVKADQLG LERSEQLREL YESLSVAESS ASGGSQVSRR ASATALSPED LTDTEWYYLV 120 CMSFVFNIGE GIACRITGGA LGNGEPIWLC NAHTADSKVF TRSLLAKSAS LLTVVCFPFL 180 GGVLEIGTTE HITEDLNVIQ CVKTLFLEAH PYGTISTRSD YQEIFDPLNS DKYIPTFGTE 240 AFPTTSTSVF EQELEDHDSF INGGGASQVQ SWQFVGEELN NCVHQPVNSS DCVSQTFVGG 300 TTGRVSCNPR KSRPQRLGQI QEQSNRLNMD DDVHYQGVIS TIFKTTHQLV LGPQFQNFDK 360 RSSFTQWRRL PLSAKTLGEK SQNMLKKIVF EVPRMHQKEL LPDTPEDNMF KVGDETGNHA 420 LSERKCREKL NDRFMTLRSI IPLISKIDKV SILDDTIDYL QELQRRVQEL ESCREYTDTE 480 MQMPMKRKKP EDEDERASAN CLNTKRKESD VNVGEDEPAD TGYAGLTDNL RIGSFGNEVV 540 IELRCAWREG ILLEIMDVIS HLNLDSHSVQ SSTGDGLLCL TVNCKHKGTN IATAGMIQEA 600 LQRVAWIC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-13 | 8 | 206 | 8 | 192 | Transcription factor MYC3 |
4rqw_B | 2e-13 | 8 | 206 | 8 | 192 | Transcription factor MYC3 |
4rs9_A | 2e-13 | 8 | 206 | 8 | 192 | Transcription factor MYC3 |
4yz6_A | 2e-13 | 8 | 206 | 8 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Localized in trichome developing region of leaves, prior to trichome initiation. Levels increase in initiating and young trichome cells, but dropped in the pavement cells between trichomes. Disappears in mature trichomes. {ECO:0000269|PubMed:12917293}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous with higher levels in buds and flowers. Specifically localized in developing root hair cells. Expressed in epidermal root hair cells (trichoblasts) and moves to root hairless cells (atrichoblasts) by a cell-to-cell movement through plasmodesmata (at protein level). {ECO:0000269|PubMed:12956536, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15590742}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation but promotes trichome formation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Involved in seed mucilage production. Activates the transcription of GL2. {ECO:0000269|PubMed:12917293, ECO:0000269|PubMed:12956536, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15590742}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013606937.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. Negatively regulated by MYB66/WER, GL3 and BHLH2 in the developing non-hair cells, and positively regulated by CPC and TRY in the developing hair cells. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15590742}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013606936.1 | 0.0 | PREDICTED: transcription factor EGL1 isoform X1 | ||||
Refseq | XP_013606937.1 | 0.0 | PREDICTED: transcription factor EGL1 isoform X1 | ||||
Swissprot | Q9CAD0 | 0.0 | EGL1_ARATH; Transcription factor EGL1 | ||||
TrEMBL | A0A0D3E4K4 | 0.0 | A0A0D3E4K4_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DPQ6 | 0.0 | A0A3P6DPQ6_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g035460.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63650.3 | 0.0 | bHLH family protein |