PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013606928.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 364aa MW: 41821.4 Da PI: 6.9169 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.2 | 5.4e-11 | 78 | 110 | 3 | 35 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekv 35 ++k +rr+++NReAA++sR+RKka++++Le+ XP_013606928.1 78 PDKTQRRLAQNREAAKKSRLRKKAYVQQLETSR 110 689**************************9854 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.3E-4 | 76 | 138 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.0E-7 | 76 | 123 | No hit | No description |
PROSITE profile | PS50217 | 8.737 | 78 | 120 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-8 | 78 | 108 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.31E-6 | 80 | 114 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 83 | 98 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.4E-28 | 166 | 241 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MNTTTSSHFV PPTRFEIYDP LNQISTMWEE SFKNNGGGFY TPNSIIIPTN QKPYSLSEDG 60 TEGTPHKFDQ EASTSRHPDK TQRRLAQNRE AAKKSRLRKK AYVQQLETSR LKLIRLEQEL 120 DRARQQGFYA SKRVDTNALS FSDNMCSGIV AFEMEYGHWV EEQNMQIHEL RTVLNGQVSD 180 VEIRLLVDNA MKHYFQLFLM KSAAAKLDVF YIMSGMWKTS AERFFLWIGG FRPSELLKVL 240 VPHFDPMMDQ QVLDVCNLRQ SCQQAEDAVS QGMEKLQHTL AESVAAGELG EGSYVPQITS 300 AMERLEALVS FVDQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWETRQ 360 REPT |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013606928.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353085 | 0.0 | AK353085.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-10-F22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013606928.1 | 0.0 | PREDICTED: transcription factor TGA4 | ||||
Refseq | XP_013606929.1 | 0.0 | PREDICTED: transcription factor TGA4 | ||||
Swissprot | Q39162 | 0.0 | TGA4_ARATH; Transcription factor TGA4 | ||||
TrEMBL | A0A0D3EGL0 | 0.0 | A0A0D3EGL0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6E215 | 0.0 | A0A3P6E215_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g173550.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2976 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10030.2 | 0.0 | TGACG motif-binding factor 4 |
Publications ? help Back to Top | |||
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