PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013606854.1 | ||||||||
Common Name | Bo_7580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 206aa MW: 23288.7 Da PI: 4.6716 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.5 | 2.5e-16 | 109 | 159 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f + +Aa+a++ a+ kl+g XP_013606854.1 109 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESNVDAARAYDCAAFKLRG 159 7********.**********954..34**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.2E-31 | 108 | 168 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.395 | 109 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-35 | 109 | 173 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-11 | 109 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-22 | 109 | 168 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.24E-29 | 109 | 167 | No hit | No description |
PRINTS | PR00367 | 3.8E-13 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-13 | 149 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MAAFEESSDL DAIQEHLLED FLVADGFMGD FDFNASFVSG LWCIEPVMNQ VPKQEPDSPV 60 LDPDSFVREF LQVEAESSSE QNSSPHETDQ SVSPRKEAKR LEEEEEPRHY RGVRRRPWGK 120 FAAEIRDPAK KGSRIWLGTF ESNVDAARAY DCAAFKLRGR KAVLNFPLDA GKYEAPVNLG 180 RKRKRSDVQE ELQRSQSNSS SSSSDL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-28 | 108 | 168 | 4 | 64 | ATERF1 |
3gcc_A | 2e-28 | 108 | 168 | 4 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bol.13602 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013606854.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY350710 | 0.0 | AY350710.1 Brassica oleracea clone BAC Bo37N21, partial sequence. | |||
GenBank | HQ613948 | 0.0 | HQ613948.1 Brassica napus ethylene response factor 50 (ERF50) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001303211.1 | 1e-150 | ethylene-responsive transcription factor ERF106-like | ||||
Refseq | XP_013606854.1 | 1e-150 | PREDICTED: ethylene-responsive transcription factor ERF106 | ||||
Swissprot | Q9LY05 | 1e-110 | EF106_ARATH; Ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | A0A0D3EH66 | 1e-149 | A0A0D3EH66_BRAOL; Uncharacterized protein | ||||
TrEMBL | G9BLT1 | 1e-149 | G9BLT1_BRANA; BnaCnng36390D protein | ||||
TrEMBL | Q6V5J8 | 1e-149 | Q6V5J8_BRAOL; AP2 transcription factor/ethylene response element | ||||
STRING | Bo9g175610.1 | 1e-149 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3229 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G07580.1 | 1e-106 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|