PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013606822.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 368aa    MW: 41222.7 Da    PI: 6.1438
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013606822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.37.4e-33186240155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l+k +gLt++hvkSHLQkYR+
  XP_013606822.1 186 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLKNPGLTIYHVKSHLQKYRT 240
                     79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.832183243IPR017930Myb domain
SuperFamilySSF466895.73E-17184240IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-30184242IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-23186240IPR006447Myb domain, plants
PfamPF002491.5E-10188239IPR001005SANT/Myb domain
PfamPF143796.3E-20274320IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNNPVPCHVD NSGGGYLFSS SSGYCNVSAV SARGRTSQTH PPVSTMPSDR LAMQSSLINN  60
HQPQEFSDPL DEFFDFSDHV SAPNPQEDGS GVKLVSSLEL REKSEWQTWA DQLMSVDNGS  120
EPNWSELLGE PSPHNPNSQV PQRSHDLQQI LTPPRQEVIA NQQHQAVSSE EQLSGRNSSA  180
SGATSKQRMR WTPELHEAFV EAVNQLGGSE RATPKAVLKL LKNPGLTIYH VKSHLQKYRT  240
ARYKPETSEA TGETQEKKIT SIEDIKSLDM KTSVEITQAL RLQMEVQKRL HEQLEIQRYL  300
QLQIEKQGRQ LQMMFEKQQK LQENKSSSSE LSPKQCNGTS AEVEFGLEAQ AVNQTEPASS  360
SRKRTRED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-28186244260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-28186244260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-28186244260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-28186244260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-28186244260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-28186244260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-28186244260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-28186244260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013606822.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459430.0AY045943.1 Arabidopsis thaliana unknown protein (At5g29000) mRNA, partial cds.
GenBankAY0851540.0AY085154.1 Arabidopsis thaliana clone 13378 mRNA, complete sequence.
GenBankBT0023440.0BT002344.1 Arabidopsis thaliana clone C104936 unknown protein (At5g29000) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606816.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
RefseqXP_013606818.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X3
RefseqXP_013606819.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X3
RefseqXP_013606820.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X3
RefseqXP_013606821.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X3
RefseqXP_013606822.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X3
SwissprotQ8GUN50.0PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A0D3E1040.0A0A0D3E104_BRAOL; Uncharacterized protein
STRINGBo9g010090.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.30.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]