PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013606817.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 404aa MW: 45475.4 Da PI: 6.4553 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.1 | 8.5e-33 | 222 | 276 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l+k +gLt++hvkSHLQkYR+ XP_013606817.1 222 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLKNPGLTIYHVKSHLQKYRT 276 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.832 | 219 | 279 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-30 | 220 | 278 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.63E-17 | 220 | 276 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.5E-23 | 222 | 276 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-10 | 224 | 275 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.2E-20 | 310 | 356 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 404 aa Download sequence Send to blast |
MKNSQFLRVE QALHATVEDR YRKFHSSFWG SSGQELMNNP VPCHVDNSGG GYLFSSSSGY 60 CNVSAVSARG RTSQTHPPVS TMPSDRLAMQ SSLINNHQPQ EFSDPLDEFF DFSDHVSAPN 120 PQEDGSGVKL VSSLELREKS EWQTWADQLM SVDNGSEPNW SELLGEPSPH NPNSQVPQRS 180 HDLQQILTPP RQEVIANQQH QAVSSEEQLS GRNSSASGAT SKQRMRWTPE LHEAFVEAVN 240 QLGGSERATP KAVLKLLKNP GLTIYHVKSH LQKYRTARYK PETSEATGET QEKKITSIED 300 IKSLDMKTSV EITQALRLQM EVQKRLHEQL EIQRYLQLQI EKQGRQLQMM FEKQQKLQEN 360 KSSSSELSPK QCNGTSAEVE FGLEAQAVNQ TEPASSSRKR TRED |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-28 | 222 | 280 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-28 | 222 | 280 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-28 | 222 | 280 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-28 | 222 | 280 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-28 | 222 | 280 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-28 | 222 | 280 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-28 | 222 | 280 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-28 | 222 | 280 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013606817.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY045943 | 0.0 | AY045943.1 Arabidopsis thaliana unknown protein (At5g29000) mRNA, partial cds. | |||
GenBank | AY085154 | 0.0 | AY085154.1 Arabidopsis thaliana clone 13378 mRNA, complete sequence. | |||
GenBank | BT002344 | 0.0 | BT002344.1 Arabidopsis thaliana clone C104936 unknown protein (At5g29000) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013606817.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X2 | ||||
Swissprot | Q8GUN5 | 0.0 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A3P6DLC6 | 0.0 | A0A3P6DLC6_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g010090.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G29000.2 | 0.0 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|