PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013606816.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 411aa MW: 46012.9 Da PI: 6.2 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104 | 8.7e-33 | 229 | 283 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l+k +gLt++hvkSHLQkYR+ XP_013606816.1 229 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLKNPGLTIYHVKSHLQKYRT 283 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.832 | 226 | 286 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-30 | 227 | 285 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.81E-17 | 227 | 283 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-23 | 229 | 283 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-10 | 231 | 282 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.3E-20 | 317 | 363 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MTLANDFGYS TAMSSSFSAL HATVEDRYRK FHSSFWGSSG QELMNNPVPC HVDNSGGGYL 60 FSSSSGYCNV SAVSARGRTS QTHPPVSTMP SDRLAMQSSL INNHQPQEFS DPLDEFFDFS 120 DHVSAPNPQE DGSGVKLVSS LELREKSEWQ TWADQLMSVD NGSEPNWSEL LGEPSPHNPN 180 SQVPQRSHDL QQILTPPRQE VIANQQHQAV SSEEQLSGRN SSASGATSKQ RMRWTPELHE 240 AFVEAVNQLG GSERATPKAV LKLLKNPGLT IYHVKSHLQK YRTARYKPET SEATGETQEK 300 KITSIEDIKS LDMKTSVEIT QALRLQMEVQ KRLHEQLEIQ RYLQLQIEKQ GRQLQMMFEK 360 QQKLQENKSS SSELSPKQCN GTSAEVEFGL EAQAVNQTEP ASSSRKRTRE D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-28 | 229 | 287 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-28 | 229 | 287 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-28 | 229 | 287 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-28 | 229 | 287 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-28 | 229 | 287 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-28 | 229 | 287 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-28 | 229 | 287 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-28 | 229 | 287 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013606816.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045943 | 0.0 | AY045943.1 Arabidopsis thaliana unknown protein (At5g29000) mRNA, partial cds. | |||
GenBank | AY085154 | 0.0 | AY085154.1 Arabidopsis thaliana clone 13378 mRNA, complete sequence. | |||
GenBank | BT002344 | 0.0 | BT002344.1 Arabidopsis thaliana clone C104936 unknown protein (At5g29000) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013606816.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X1 | ||||
Swissprot | Q8GUN5 | 0.0 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A3P6DLC6 | 0.0 | A0A3P6DLC6_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g010090.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM856 | 27 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.2 | 0.0 | G2-like family protein |
Publications ? help Back to Top | |||
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