PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013606780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 333aa MW: 36673.8 Da PI: 7.8833 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.7 | 5.6e-10 | 170 | 217 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq XP_013606780.1 170 SHSLAERARREKISERMTMLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 217 8**************************....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.45E-11 | 164 | 221 | No hit | No description |
SuperFamily | SSF47459 | 2.75E-17 | 164 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-18 | 166 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.624 | 166 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-7 | 170 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 172 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MEKQTLKYLP LGQSDPFGNV IGNGNGNEGT IGDLLGRFRN CPQESFSAGI RFPPYPGQFG 60 SDRDSNKSSL LDPDSDRVQT PKPNPRKRKS IPVGNGKDSP ASSSLTASHS KVSGENVGSK 120 DGKRSKHDEA GSSKNVIDKC DDSKGDNKDD AKPTKDYIHV RARRGQATDS HSLAERARRE 180 KISERMTMLQ DLVPGCNRIT GKAVMLDEII NYVQSLQRQV QFLSMKLATV NPRMEFNANA 240 ALSTEGESLT QSLYAMACSE QRLPSGGYYS LAKNMPRFSD THFPSSDGFV QTETQGFWEN 300 DLQSIVQMGF GDIQQQQSNN NCPEPTLQMK LEP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bol.14903 | 1e-131 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00376 | DAP | Transfer from AT3G23690 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013606780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY065441 | 1e-178 | AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds. | |||
GenBank | AY096536 | 1e-178 | AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013606780.1 | 0.0 | PREDICTED: transcription factor bHLH77-like isoform X2 | ||||
Swissprot | Q9LK48 | 0.0 | BH077_ARATH; Transcription factor bHLH77 | ||||
TrEMBL | A0A0D3AB34 | 0.0 | A0A0D3AB34_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g101470.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23690.1 | 1e-169 | bHLH family protein |
Publications ? help Back to Top | |||
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