PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013606756.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 294aa    MW: 33122.3 Da    PI: 6.3445
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013606756.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-072442762254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp+++++++L +++gL+ +q+ +WF N+R +
  XP_013606756.1 244 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 276
                     58*****************************87 PP
2ELK26.31.7e-09197218122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK +L++++++++ ++++E++
  XP_013606756.1 197 ELKIELKQGFKSRIEDVREEIM 218
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.8E-162973IPR005540KNOX1
PfamPF037905.3E-143171IPR005540KNOX1
SMARTSM012563.6E-2583138IPR005541KNOX2
PfamPF037913.4E-1987137IPR005541KNOX2
PROSITE profilePS512139.132197217IPR005539ELK domain
SMARTSM011880.0086197218IPR005539ELK domain
PROSITE profilePS5007111.839217280IPR001356Homeobox domain
SMARTSM003895.3E-11219284IPR001356Homeobox domain
SuperFamilySSF466892.4E-16219283IPR009057Homeodomain-like
CDDcd000866.52E-12220281No hitNo description
Gene3DG3DSA:1.10.10.604.9E-25224281IPR009057Homeodomain-like
PfamPF059203.3E-18237276IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEEAALGMIG ATVGGGDGGD AVLVAEQNRQ MKGEIVTNPL YEQLLAAHVA CLRVATPIDQ  60
LPTIEAQLSH SEHLLRSYAS TAVGFSHHDR HELDNFLAQY VMVLCSFKEQ LQQHVRVHAV  120
EAVMACREIE NNLHSLTGAT LGEGSGATMS EDEDDLHMDF SSDNSGVDFN GGHDMTGFGP  180
LLPTESERSL MERVRQELKI ELKQGFKSRI EDVREEIMRK RRAGKLPGDT TTVLKNWWQQ  240
HCKWPYPTED DKAKLVEETG LQLKQINNWF INQRKRNWHS NSHSLTSLKS KRKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-13220276864Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013606756.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ290730.0Z29073.1 B.napus hd1 mRNA for homeodomain-containing protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606756.10.0PREDICTED: homeobox protein HD1-like
RefseqXP_013726416.10.0homeobox protein HD1-like
SwissprotQ9FPQ80.0KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A078I9X10.0A0A078I9X1_BRANA; BnaA09g12980D protein
STRINGBra027006.1-P0.0(Brassica rapa)
STRINGBo9g028790.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.10.0KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]