PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013606670.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 431aa    MW: 45996.2 Da    PI: 8.0566
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013606670.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.11.2e-124772227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG C yG+rC+F+H+p
  XP_013606670.1 47 DEPDCIYYLRTGVCGYGSRCRFNHPP 72
                    6899********************97 PP
2zf-CCCH38.91.4e-1293118227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C++f+rtGtCk+G++Ck++H++
  XP_013606670.1  93 GQPVCQHFMRTGTCKFGASCKYHHPR 118
                     5789********************96 PP
3zf-CCCH38.81.5e-12139163226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG+Ck+G++C+F+H+
  XP_013606670.1 139 GEKECSYYMRTGHCKFGSTCRFHHP 163
                     7899********************9 PP
4zf-CCCH42.11.5e-13264289126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C++f+rtG Ck+G++C+F+H+
  XP_013606670.1 264 PGEPDCQYFMRTGDCKFGASCRFHHP 289
                     5789*********************9 PP
5zf-CCCH37.53.9e-12309335127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++t++C++fa+ G+Ck+G+ CkF H++
  XP_013606670.1 309 PGTAPCSHFAQHGICKFGPDCKFDHSM 335
                     68***********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.5E-54572IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3714573IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-104772IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-65074IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-55171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.27791119IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-691118IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-1093118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-693119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-596118IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-6137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76137165IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-10139163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6140164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4143162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788263291IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7263290IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10265289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6268291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5269289IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-7308335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793308336IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6309336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-5311334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MERYGRVGEE GSRADPSPPG TETGLEGSTW RLGLRGGGGE SFPERPDEPD CIYYLRTGVC  60
GYGSRCRFNH PPNRVPVLGG LRTEPGDFPE RMGQPVCQHF MRTGTCKFGA SCKYHHPRQR  120
GGDSVTVSLN YMGFPLRPGE KECSYYMRTG HCKFGSTCRF HHPLPPGVQP PSQQLSAIYP  180
SLHSQSGVFV ARPQLLPGSY VQSPYGTYSQ MVLPPTGMVP YPGWNPYQAS PGSQPSMGSS  240
SVPLAPSYQT SLSSNKEQSF PQRPGEPDCQ YFMRTGDCKF GASCRFHHPL EAAPPKGVNL  300
SNIGLPLRPG TAPCSHFAQH GICKFGPDCK FDHSMGSSSL SYSTSASSLT YPLGSSSLGT  360
LAASSSSTSD QRTELHSSSS VKPKTTTSGG SETVSAGVSS SMTGGVSQSE PVAETKNGDS  420
ASIEDEIKAS S
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013606670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606670.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A078FHI50.0A0A078FHI5_BRANA; BnaC09g39260D protein
TrEMBLA0A0D3EEC20.0A0A0D3EEC2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DPI00.0A0A3P6DPI0_BRAOL; Uncharacterized protein
STRINGBo9g154780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-179C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]