PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013606642.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 211aa MW: 24111.1 Da PI: 10.3732 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46.6 | 7.2e-15 | 141 | 191 | 4 | 54 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +kr +r+ kNRe+A rsR+RK+a+i eLe ++ L++eN +Lk + e+lk XP_013606642.1 141 DKRHKRMTKNRESAARSRARKQAYINELELEIVHLKKENARLKRQEEQLKM 191 8******************************************99999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.4E-10 | 138 | 198 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.208 | 140 | 190 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.5E-12 | 141 | 191 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 9.0E-13 | 142 | 190 | No hit | No description |
SuperFamily | SSF57959 | 9.38E-11 | 142 | 190 | No hit | No description |
CDD | cd14707 | 2.15E-24 | 142 | 196 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 145 | 160 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MLSSAKHKIN YSAFSIPSST SSSLSHSLSQ TKNMTQVTME EVWKEINLAS LHQHRRLNID 60 HEPVLSNQNP NNSIFQDFLN KPLNQEPPPS SSSTHHGSLL APPATVISFN PHSIDTHFDE 120 SAMFGCFGKK RGQDSDESRG DKRHKRMTKN RESAARSRAR KQAYINELEL EIVHLKKENA 180 RLKRQEEQLK MAEATQHQTK KILQRSWTSP F |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed on the flanks of the shoot apex. {ECO:0000269|PubMed:23543784}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013606642.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013606642.1 | 1e-156 | PREDICTED: protein FD-like isoform X2 | ||||
Swissprot | Q7PCC6 | 5e-85 | FDP_ARATH; bZIP transcription factor 27 | ||||
TrEMBL | A0A0D3E373 | 1e-138 | A0A0D3E373_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g024710.1 | 1e-139 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17770.2 | 7e-83 | basic region/leucine zipper motif 27 |
Publications ? help Back to Top | |||
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