PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013606555.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 435aa    MW: 49450.6 Da    PI: 7.2951
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013606555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.91.2e-3761353128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     +G+rF+Pt eel+++yLk+k  +k+  ++++i+e++i+ ++P++Lp  +k+k+++ ewyfFs r+  ++++k ++r+t sg+Wk tg+d e+++k
  XP_013606555.1   6 VGYRFSPTGEELINYYLKNKNLDKPWLVDDAINEINICAHDPESLPslSKLKSNDLEWYFFSLREYYEPEKKGTKRTTPSGFWKVTGSDIEIKDK 100
                     7************************999999***************5448888888**************************************9 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g ++g+kktLv+++g++ +g++t+Wv h y++
  XP_013606555.1 101 rgHGVVIGIKKTLVYHQGKSTNGVRTHWVTHVYHI 135
                     777788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.9584153IPR003441NAC domain
SuperFamilySSF1019411.57E-435153IPR003441NAC domain
PfamPF023655.7E-206135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MEKNLVGYRF SPTGEELINY YLKNKNLDKP WLVDDAINEI NICAHDPESL PSLSKLKSND  60
LEWYFFSLRE YYEPEKKGTK RTTPSGFWKV TGSDIEIKDK RGHGVVIGIK KTLVYHQGKS  120
TNGVRTHWVT HVYHITSLSL NQSNYVICKV TYKGVDGDSL FGNNSKSNEL RHSMVCVSNT  180
ARGINTTPEV EQPGDKGLYI SMDDLPTPMN EQDDPSLFNS DTFLNDIYPH QQPQIHWDDE  240
YFSKCLTFNG GNHADVLGDL DIIMDEHRND HRPKKALTGF LPDYSSESDD AESISATSYQ  300
GVSSPDSAHN VSRHFHTSVD EIPSLRKDSG KDTQPHAETS INRKTRKSHF TRRIIPSKQE  360
VKEVKSTATD ASNDKKSSSP MVKREKKGWL ITEDAMERKN RKNPQYIFVM NMIISFIILV  420
AVIGNIICVL QRVKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-20715018165Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013606555.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606555.10.0PREDICTED: NAC domain-containing protein 69-like
RefseqXP_013722759.10.0NAC domain-containing protein 69-like
SwissprotQ9M1261e-138NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A0D3DZV10.0A0A0D3DZV1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DMQ80.0A0A3P6DMQ8_BRAOL; Uncharacterized protein
STRINGBo9g004080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-121NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]