PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013606550.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 339aa    MW: 37703.1 Da    PI: 8.4822
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013606550.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45e-18188242256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_013606550.1 188 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKMALAKQLNLRPRQVEVWFQNRRARTK 242
                     678899***********************************************98 PP
2HD-ZIP_I/II1292e-41188278192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rlsk+q+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +lk
  XP_013606550.1 188 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKMALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELR-ALK 278
                     69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.8E-18178245IPR009057Homeodomain-like
PROSITE profilePS5007116.973184244IPR001356Homeobox domain
SMARTSM003896.8E-16186248IPR001356Homeobox domain
PfamPF000462.1E-15188242IPR001356Homeobox domain
CDDcd000868.62E-16188245No hitNo description
Gene3DG3DSA:1.10.10.608.7E-18188242IPR009057Homeodomain-like
PROSITE patternPS000270219242IPR017970Homeobox, conserved site
PfamPF021832.8E-11244278IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.1E-26244287IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MELALCLGDN TNKFSFMEKP SKTNNNPSAS STSTSDKDLG FNMGLNVLGF GGHRSLSSSS  60
SPSMEDEKDK NKRKLAPKAI DSDGFRVSSS VDPSLQLQLH FPWLPENSRQ GGRISGAATV  120
PEEEEEAALS MSVSPPDSVT SSFRLDFGIK SYGYERRNNK RDIENDDVER STSRASNEDN  180
DDDNGATRKK LRLSKDQSAF LEDSFKEHST LNPKQKMALA KQLNLRPRQV EVWFQNRRAR  240
TKLKQTEVDC EYLKRCCESL TEENRRLQKE VKELRALKTS SPFCMQLPAT TLTMCPSCER  300
VATSVSHPSS SAAHNIDLSK SSFHSPLISV KPGPGKQVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186192TRKKLRL
2236244RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013606550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606550.10.0PREDICTED: homeobox-leucine zipper protein HAT14
RefseqXP_013670853.10.0homeobox-leucine zipper protein HAT14-like
SwissprotP466651e-173HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A0D3EH950.0A0A0D3EH95_BRAOL; Uncharacterized protein
STRINGBo9g175900.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-161homeobox from Arabidopsis thaliana