PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013606523.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 323aa MW: 36299.8 Da PI: 6.634

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013606523.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62	1.2e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+lv++vk++G +W++ ++ g++R++k+c++rw +yl XP_013606523.1 14 KGPWTPDEDEKLVKYVKKHGHSSWSALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.5	1.1e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ G++ W+tIa+ ++ gRt++++k++w+++l XP_013606523.1 67 RGKFSPEEEQTILNLHAVVGNK-WSTIANNLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.572	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.76E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	6.0E-16	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.9E-18	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-25	15	68	IPR009057	Homeodomain-like
CDD	cd00167	4.82E-13	16	61	No hit	No description
PROSITE profile	PS51294	26.549	62	116	IPR017930	Myb domain
SMART	SM00717	1.1E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-15	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-27	69	117	IPR009057	Homeodomain-like
CDD	cd00167	7.16E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MGRSPSSGES GLKKGPWTPD EDEKLVKYVK KHGHSSWSAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SPEEEQTILN LHAVVGNKWS TIANNLPGRT DNEIKNFWNT HLKKKLIQMG 120 VDPMTHRPRT DVLSSLSQLI SLSSNLRGFV DQEQIMLKLQ TEMAKLELFQ YLLQPPSMYN 180 NINPNDFDTP SLLNSIASTT SNNLDLGSYI QDFNSLPSLK NLNTNIGPSS VFPQNLDANH 240 FKFFNQRENL LISPSWLSDP SSSNQSLLPS LDPSSVMTDD LIRSQYVIED VNSNLTSSSY 300 QESGASAAWP DHLLDDSIFF DIP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-29	12	116	5	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269\|PubMed:24902892}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250\|UniProtKB:Q9M2D9}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013606523.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC155344	0.0	AC155344.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH080A08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013606523.1	0.0	PREDICTED: myb-related protein Hv1-like
Refseq	XP_013606524.1	0.0	PREDICTED: myb-related protein Hv1-like
Refseq	XP_013606525.1	0.0	PREDICTED: myb-related protein Hv1-like
Refseq	XP_013606526.1	0.0	PREDICTED: myb-related protein Hv1-like
Refseq	XP_013606527.1	0.0	PREDICTED: myb-related protein Hv1-like
Refseq	XP_013606528.1	0.0	PREDICTED: myb-related protein Hv1-like
Refseq	XP_013606529.1	0.0	PREDICTED: myb-related protein Hv1-like
Refseq	XP_013606530.1	0.0	PREDICTED: myb-related protein Hv1-like
Swissprot	Q9SBF3	0.0	MYB92_ARATH; Transcription factor MYB92
TrEMBL	A0A0D3EGI3	0.0	A0A0D3EGI3_BRAOL; Uncharacterized protein
STRING	Bo9g172290.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10280.1	1e-166	myb domain protein 92

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]