PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013606497.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 340aa    MW: 39053.6 Da    PI: 5.7105
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013606497.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.84.1e-34141052102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d++ +++isws++++sf+v+ + ef+k++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+  l+++
  XP_013606497.1  14 FLTKTYEMVDDSSSDSIISWSDHNKSFIVKSPAEFSKDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEK---------WEFANEDFVRGQPYLMKN 99 
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_013606497.1 100 IHRRKP 105
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5810103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.58E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.0E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDENNGVSTS LPPFLTKTYE MVDDSSSDSI ISWSDHNKSF IVKSPAEFSK DLLPRFFKHK  60
NFSSFIRQLN TYGFRKVDPE KWEFANEDFV RGQPYLMKNI HRRKPVHSHS LQNLQAQSPL  120
SESERQSMKD QIERLKRDKE VLLTDLQNQE LERKGFELQV TALKDRLQHM EQRQRSIVTF  180
VSQVLEKPGF SLNLETHETR KRKLQETETS LPPGRSHADQ VEKLESSLTF LENLVTESCD  240
KGMDIDVNES TSCAESLSNG DNRAKSTKID MNAEPVTVAV AAPKTGVNDV FWEQCLTENP  300
GSIEQQEVQS ERRDVDANKI GDGRTFWWKA KNVNDIAERA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-22910324129Heat shock factor protein 1
5d5v_B3e-22910324129Heat shock factor protein 1
5d5v_D3e-22910324129Heat shock factor protein 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings and at lower levels in leaves. {ECO:0000269|PubMed:18381353}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013606497.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606495.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_013606496.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_013606497.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_013706709.10.0heat stress transcription factor A-4c-like
RefseqXP_013706711.10.0heat stress transcription factor A-4c-like
RefseqXP_013706712.10.0heat stress transcription factor A-4c-like
RefseqXP_013706713.10.0heat stress transcription factor A-4c-like
RefseqXP_013706715.10.0heat stress transcription factor A-4c-like
SwissprotQ9FK720.0HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLA0A078GES20.0A0A078GES2_BRANA; BnaC09g18620D protein
TrEMBLA0A0D3E6P90.0A0A0D3E6P9_BRAOL; Uncharacterized protein
STRINGBo9g062710.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-180HSF family protein
Publications ? help Back to Top
  1. Faragó D,Sass L,Valkai I,Andrási N,Szabados L
    PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.
    Front Plant Sci, 2018. 9: p. 219
    [PMID:29520290]