PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013606231.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 315aa MW: 35075.2 Da PI: 5.7305 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.6 | 6.3e-29 | 152 | 212 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD y+WrKYGqK++ g++fprsYYrCt++ +C+++k+v+rs++dp+v+e tY+g+H+++ XP_013606231.1 152 DDVYSWRKYGQKDILGAKFPRSYYRCTHRstqNCWATKQVQRSDSDPTVFELTYRGTHTCQ 212 8***************************9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.85 | 146 | 209 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.6E-27 | 147 | 213 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.02E-25 | 150 | 213 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.8E-38 | 151 | 213 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.2E-26 | 152 | 212 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MEGQKAMLAW EQKTLQSEVS LGLEAAKKLQ ARLSEASSPS SSSSYPAAET NEILMEQILS 60 SYDKVLVMLN WSSSPPVQLT PATVAVVPVV NSGGIPESPA SINGSPRSED GGGSSESHRQ 120 DHMFNSRKRK MLPKWTEKVR ISPERGLEGP QDDVYSWRKY GQKDILGAKF PRSYYRCTHR 180 STQNCWATKQ VQRSDSDPTV FELTYRGTHT CQQGTPPPHP PPASPEKRNT RPKLTTTAQK 240 PNDLLESLKT SLTVRTEGLD DADNVFSFPN TPPFCDFGTI NDEFSSPIFD VVDWLNPTVE 300 IDPAFPTFLQ ESIYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 6e-19 | 151 | 222 | 16 | 79 | Disease resistance protein RRS1 |
5w3x_D | 6e-19 | 151 | 222 | 16 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 130 | SRKRKM |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates during developmental leaf senescence. {ECO:0000269|PubMed:22268143}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013606231.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU912409 | 0.0 | EU912409.1 Brassica napus WRKY53-1 transcription factor (WRKY53-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013606231.1 | 0.0 | PREDICTED: probable WRKY transcription factor 53 | ||||
Swissprot | Q9SUP6 | 1e-154 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | A0A3P6G554 | 0.0 | A0A3P6G554_BRAOL; Uncharacterized protein | ||||
STRING | Bra013732.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1933 | 27 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 1e-141 | WRKY family protein |