PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013606218.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 282aa MW: 31796.3 Da PI: 8.7857

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013606218.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.3	7.9e-39	33	92	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++lkcprC+s+ntkfCyynny+lsqPr+fCk+CrryWt+GGalrnvP+Ggg+rk kks XP_013606218.1 33 DQQTLKCPRCNSSNTKFCYYNNYNLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS 92 57899***************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.5E-33	35	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.711	37	91	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-25	39	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MSSHTNLHSP KPDHRISGTS HTKKSPSSSS SQDQQTLKCP RCNSSNTKFC YYNNYNLSQP 60 RHFCKSCRRY WTRGGALRNV PIGGGCRKTK KSFKPNTSTP SCQRFYSSVM EDSSKFFPPP 120 TTMGFQLMNN QEVLGLRSME QAKTTPVDVR SGLSLMGFGD YNNHSPATFT TAGTLATSIE 180 TLSCLNQDLH WRLQQQRMAM LLGNSTEENV VVERPQPVLY RNLEIVNSLP TKKGENQTEW 240 SFSYNNDNEE VINNNDTNNT GGSDQRNGVQ AWTDLNLCHD SW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013606218.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189266	0.0	AC189266.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022L12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013606218.1	0.0	PREDICTED: dof zinc finger protein DOF5.7
Swissprot	Q9LSL6	1e-143	DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBL	A0A0D3E2C9	0.0	A0A0D3E2C9_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6DP30	0.0	A0A3P6DP30_BRAOL; Uncharacterized protein
STRING	Bo9g018800.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4950	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	1e-123	Dof family protein

Publications ? help Back to Top
Castorina G,Fox S,Tonelli C,Galbiati M,Conti L A novel role for STOMATAL CARPENTER 1 in stomata patterning. BMC Plant Biol., 2016. 16(1): p. 172 [PMID:27484174]