PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013606193.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 199aa MW: 22496.7 Da PI: 6.3594

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013606193.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.7	9.7e-28	106	164	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk++ + r+YY+C+s+gC+vkk+ver+ +d +v++tYeg Hnhe XP_013606193.1 106 MDDGYKWRKYGKKSVKNNINKRNYYKCSSEGCMVKKRVERDGKDAAYVITTYEGVHNHE 164 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-30	93	166	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	98	166	IPR003657	WRKY domain
PROSITE profile	PS50811	29.402	101	166	IPR003657	WRKY domain
SMART	SM00774	5.6E-31	106	165	IPR003657	WRKY domain
Pfam	PF03106	6.2E-22	107	164	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MSFPQNPNPN FTFLSDENFT SPFMDNFDFS NLMFDVDEGG STGLVQEEAS PPTSIVSSET 60 LNGESSGSGS AVTTLNKKES TRSKDGETKE PGHRVAFRTR SKIDVMDDGY KWRKYGKKSV 120 KNNINKRNYY KCSSEGCMVK KRVERDGKDA AYVITTYEGV HNHEIPSHVY YSDTVSSYDR 180 DNWNQHSLLQ FIQQISPPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-24	96	167	7	78	Probable WRKY transcription factor 4
2lex_A	3e-24	96	167	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013606193.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013606193.1	1e-148	PREDICTED: probable WRKY transcription factor 51 isoform X2
Swissprot	Q93WU9	1e-104	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A0D3E293	1e-147	A0A0D3E293_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6DZX3	1e-147	A0A3P6DZX3_BRAOL; Uncharacterized protein
STRING	Bo9g018440.1	1e-148	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	1e-107	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]