PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013606192.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 210aa MW: 23792.7 Da PI: 10.2257

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013606192.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.6	1.1e-27	117	175	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk++ + r+YY+C+s+gC+vkk+ver+ +d +v++tYeg Hnhe XP_013606192.1 117 MDDGYKWRKYGKKSVKNNINKRNYYKCSSEGCMVKKRVERDGKDAAYVITTYEGVHNHE 175 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-30	104	177	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-26	109	177	IPR003657	WRKY domain
PROSITE profile	PS50811	29.402	112	177	IPR003657	WRKY domain
SMART	SM00774	5.6E-31	117	176	IPR003657	WRKY domain
Pfam	PF03106	6.9E-22	118	175	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MLNKFRRRSS SFLINGEDRL KFGEKLMATK RKKKKISDLS PQVHILFTTG GSTGLVQEEA 60 SPPTSIVSSE TLNGESSGSG SAVTTLNKKE STRSKDGETK EPGHRVAFRT RSKIDVMDDG 120 YKWRKYGKKS VKNNINKRNY YKCSSEGCMV KKRVERDGKD AAYVITTYEG VHNHEIPSHV 180 YYSDTVSSYD RDNWNQHSLL QFIQQISPPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-24	107	178	7	78	Probable WRKY transcription factor 4
2lex_A	2e-24	107	178	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013606192.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493813	1e-121	AB493813.1 Arabidopsis thaliana At5g64810 mRNA for hypothetical protein, partial cds, clone: RAAt5g64810.
GenBank	AF426252	1e-121	AF426252.1 Arabidopsis thaliana WRKY transcription factor 51 (WRKY51) mRNA, complete cds.
GenBank	BT025755	1e-121	BT025755.1 Arabidopsis thaliana At5g64810 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013606192.1	1e-156	PREDICTED: probable WRKY transcription factor 51 isoform X1
Swissprot	Q93WU9	5e-82	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A0D3E293	1e-115	A0A0D3E293_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6DZX3	1e-115	A0A3P6DZX3_BRAOL; Uncharacterized protein
STRING	Bo9g018440.1	1e-116	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5711	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	2e-84	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]