PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013605970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 426aa MW: 48208.1 Da PI: 6.6512 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 122.7 | 3.1e-38 | 6 | 136 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevls 94 +G+rF+Pt ee++++yLk k+ +++ ++e+i+e++i+ ++P+ Lp +k+++++ wyfF++r+ ++++ +k ++r+t sg+Wkatgkd+ + + XP_013605970.1 6 VGYRFSPTGEEVINYYLKSKILDRPWLVNEAINEINICAYDPEFLPslSKLESKDLVWYFFTPREYHASEkKKGTKRTTPSGFWKATGKDRIIRD 100 7************************999899***************5447777888********9988762667888****************** PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +g +g+kktLv+++g+a +g+ t Wvmhey+ XP_013605970.1 101 KrgHGVGIGIKKTLVYHHGKAANGVGTPWVMHEYHT 136 965566699*************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 42.408 | 4 | 154 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.24E-42 | 5 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-23 | 6 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MERNLVGYRF SPTGEEVINY YLKSKILDRP WLVNEAINEI NICAYDPEFL PSLSKLESKD 60 LVWYFFTPRE YHASEKKKGT KRTTPSGFWK ATGKDRIIRD KRGHGVGIGI KKTLVYHHGK 120 AANGVGTPWV MHEYHTTSLP LNQRNYVICQ VMYKGAGGDS LYGNNSNALS HSTLVSDLNT 180 DREINTAPQV EQPWQDLFFS VDDLANPLNE QDDTSLFNPD TLFNDNYCPY QQPQAPSDDD 240 YIDELLSFNG GNYDDVLRDP NITMHRNDHR PKKALTGIIV DCSSDSDVES ISATSYQETS 300 SPDSFHSLSA QFHTSGDEIP SLRKDSCTDI KPPAETSINR KTRKAHLTRR TVKEGESKGV 360 NASVDKKSSS SMVKTEKKGW FITEEAMDRR NRKNPPYIYL MNMIIGFILL VAVIDNIMSI 420 LLSVKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-20 | 7 | 154 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-20 | 7 | 154 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-20 | 7 | 154 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-20 | 7 | 154 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-20 | 7 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-20 | 7 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-20 | 7 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-20 | 7 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-20 | 7 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-20 | 7 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-20 | 7 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-20 | 7 | 154 | 23 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-20 | 7 | 154 | 20 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-20 | 7 | 154 | 20 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bol.15015 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013605970.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ420439 | 0.0 | KJ420439.1 Brassica napus NAC transcription factor 69-1 (NAC69-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013605970.1 | 0.0 | PREDICTED: NAC domain-containing protein 69-like isoform X1 | ||||
Refseq | XP_013722846.1 | 0.0 | NAC domain-containing protein 69 isoform X1 | ||||
Swissprot | Q9M126 | 1e-156 | NAC69_ARATH; NAC domain-containing protein 69 | ||||
TrEMBL | A0A0D3DZV3 | 0.0 | A0A0D3DZV3_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g004100.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1982 | 19 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01550.1 | 1e-153 | NAC domain containing protein 69 |
Publications ? help Back to Top | |||
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