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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_013605878.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
BBR-BPC |
| Protein Properties |
Length: 300aa MW: 33903.3 Da PI: 10.0921 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013605878.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 354.6 | 2.1e-108 | 1 | 300 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyye...........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84
mdd g+r+ g+++ + ++ ++ +q+ms+iaerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erd++l+al
XP_013605878.1 1 MDDGGHRD--NGWHKashgkwmmqqhQ-PQQHQPSMKQVMSIIAERDAAIQERNLAISEKKAALAERDMAFLQRDTAIAERNNAIMERDSALAAL 92
88888854..44444455677776431.344444556********************************************************** PP
GAGA_bind 85 llvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179
++++ s++++ ++ +i+ +qq++ q++++a+e+re+e++ +p++ ++ + +++k + a+k k+++k+kk++e++ k
XP_013605878.1 93 QFRDSSMSTSR-------QHQPHIH-HQQHHMLQVTENAYETRETETSPPPPTKPKRGRKAKEPKAP--A-ANKRGPKTQRKVKKENEDDLTKLM 176
**998854433.......3444555.4444669*************888888655554444444433..2.222333344566666667767777 PP
GAGA_bind 180 kesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273
+++ + sk++++s++ +ln v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S++PLP+ +++++aR++grKmS++af+klL++La
XP_013605878.1 177 FDEEATGSKSDWRSQETvGLNRVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMHPLPALPNKKHARVGGRKMSGSAFSKLLSRLA 271
7776689*******99659**************************************************************************** PP
GAGA_bind 274 aeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
aeG +dlsnpvDLkdhWAkHGtn+++ti+
XP_013605878.1 272 AEGhHDLSNPVDLKDHWAKHGTNRYITIK 300
***88***********************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MDDGGHRDNG WHKASHGKWM MQQHQPQQHQ PSMKQVMSII AERDAAIQER NLAISEKKAA 60
LAERDMAFLQ RDTAIAERNN AIMERDSALA ALQFRDSSMS TSRQHQPHIH HQQHHMLQVT 120
ENAYETRETE TSPPPPTKPK RGRKAKEPKA PAANKRGPKT QRKVKKENED DLTKLMFDEE 180
ATGSKSDWRS QETVGLNRVV YDETTMPPPV CSCTGVLRQC YKWGNGGWQS SCCTTTLSMH 240
PLPALPNKKH ARVGGRKMSG SAFSKLLSRL AAEGHHDLSN PVDLKDHWAK HGTNRYITIK
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
