PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013605707.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 323aa    MW: 35804.6 Da    PI: 6.7068
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013605707.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.9e-18232265134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C +tkTp+WR gp g+ktLCnaCG++y++ +
  XP_013605707.1 232 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 265
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.7E-911322IPR016679Transcription factor, GATA, plant
SMARTSM004017.2E-16226276IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.728226262IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15230289No hitNo description
Gene3DG3DSA:3.30.50.102.4E-14230263IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.33E-14231278No hitNo description
PfamPF003204.2E-16232265IPR000679Zinc finger, GATA-type
PROSITE patternPS003440232257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MFGQSFPEDI DCGNFFDNMD DILDFPGCDM DVGFSIGDSD SFPNIWTNHQ DTWPAASDPL  60
FSSNTNSDSS PELYVPFEDI VKVERPASFV EESLVAKKED SFSRNTDSSS SHSQFRSSSP  120
VSVLESSSSS SQTTNATSLV LSGKHGRPRT KRPRPPVQET DRVNVCGADS RLIVRIPKQF  180
LSDHSKMITK KKKKKAKVPS SYSSSGIDLE TNGSNNNNFD SYDSEQHPVR KCMHCEVTKT  240
PQWRLGPMGP KTLCNACGVR YKSGRLFPEY RPANSPTFTP ALHSNSHKKV AEMRSKRCSG  300
GSYTNEESDL QDLIPNNAYI GVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150154KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013605707.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534610.0AK353461.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-37-G07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605707.10.0PREDICTED: GATA transcription factor 8-like
SwissprotQ9SV301e-165GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A0D3DT370.0A0A0D3DT37_BRAOL; GATA transcription factor
STRINGBo8g085930.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-151GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]