PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013605677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 265aa MW: 29250.4 Da PI: 5.9032 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.9 | 5.6e-21 | 96 | 156 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps++++++++++l +++e++V++WFqNrRa+ k+ XP_013605677.1 96 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKDITEELsqhgQISEQNVYNWFQNRRARSKR 156 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 103.5 | 1.4e-33 | 95 | 158 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq XP_013605677.1 95 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQISEQNVYNWFQNRRARSKRKQ 158 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-17 | 92 | 159 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.933 | 92 | 157 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-14 | 94 | 161 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.15E-17 | 95 | 158 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.14E-13 | 96 | 158 | No hit | No description |
Pfam | PF00046 | 8.2E-19 | 96 | 156 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MMEWDNNQQQ QPNNQNSSNL QGIDVSGGGS SSGGMYVKVM TDEQLETLRK QIAIYATICD 60 RLVEMHKTLT SQQDLAGGRL GGLYVDPTIG HKMTARQRWT PTPVQLQILE RIFDQGTGTP 120 SKQKIKDITE ELSQHGQISE QNVYNWFQNR RARSKRKQHG GGGGIGGSNN NNGESEVETE 180 AETLNGKRKM PESLRVLPNG NNGIGTTTGT SPRPEDLCFQ SPEMSSDLHL LGVLSNPRDD 240 HLVGKMGLSE SYNLYDHVED YGMSG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 157 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013605677.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013605677.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 13-like | ||||
Swissprot | O81788 | 1e-141 | WOX13_ARATH; WUSCHEL-related homeobox 13 | ||||
TrEMBL | A0A0D3A1R1 | 0.0 | A0A0D3A1R1_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g006370.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4620 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-128 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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