PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013605663.1 | ||||||||
Common Name | 27.t00050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 508aa MW: 56382.2 Da PI: 7.062 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50 | 4e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_013605663.1 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.6E-10 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.14E-11 | 5 | 45 | No hit | No description |
CDD | cd00202 | 7.68E-16 | 6 | 55 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.2E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 6.5E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 6.0E-10 | 261 | 355 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYAPLHA RADGEENQDH 60 QRYQRMKSIS LSNKNTETNM LKRRAIQESL PNKRQVLEFN YGLKKAMIEE DASNRSSSGS 120 AISNTESCAQ FSSAGDGSEL NAWETTVPCK RRTCVGRPKT SSSVEKLTKD LYNILQEQQQ 180 SSVSSEGEDL LFESMFSAEI GHGSVLMMDP PHSFAREEES ESSSLSSISD AYSHSVKRAE 240 IGAVRGSEFV GQAIKQEQLK RTKSQTGRVH VLGSHSSPLC SIDLKDVFNF DEFTEQFTEE 300 EQKKLMKLLP QIDSVNLADS LRMMFESAQF KENFSLFQQL IVDGVFEMPS SSGAKLEDIR 360 AFKKLALSDF NKSRLVESYN HLKEREKGTG DSVTTTTSRS SLNPNVPKTI VTIKKHCENQ 420 TQLKSESRGL MRSPKSVTKM KASDESKVLT ENNGSCFSPR SLASVFAQES GGITLFGNEN 480 NCSSDQDLLL MDLPSNGSFP QAELLHQL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013605663.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC236791 | 0.0 | AC236791.1 Brassica napus clone JBr38I20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013605663.1 | 0.0 | PREDICTED: GATA transcription factor 26-like | ||||
Refseq | XP_013738319.1 | 0.0 | GATA transcription factor 26-like | ||||
Swissprot | Q8W4H1 | 0.0 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | A0A0D3DMI3 | 0.0 | A0A0D3DMI3_BRAOL; Uncharacterized protein | ||||
TrEMBL | Q2A9H0 | 0.0 | Q2A9H0_BRAOL; GATA zinc finger containing protein | ||||
STRING | Bo8g049560.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 0.0 | GATA transcription factor 26 |