PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013605663.1
Common Name27.t00050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 508aa    MW: 56382.2 Da    PI: 7.062
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013605663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA504e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_013605663.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                    ****************88888***********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.6E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-11545No hitNo description
CDDcd002027.68E-16655No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.5E-14741IPR000679Zinc finger, GATA-type
PfamPF139196.0E-10261355IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYAPLHA RADGEENQDH  60
QRYQRMKSIS LSNKNTETNM LKRRAIQESL PNKRQVLEFN YGLKKAMIEE DASNRSSSGS  120
AISNTESCAQ FSSAGDGSEL NAWETTVPCK RRTCVGRPKT SSSVEKLTKD LYNILQEQQQ  180
SSVSSEGEDL LFESMFSAEI GHGSVLMMDP PHSFAREEES ESSSLSSISD AYSHSVKRAE  240
IGAVRGSEFV GQAIKQEQLK RTKSQTGRVH VLGSHSSPLC SIDLKDVFNF DEFTEQFTEE  300
EQKKLMKLLP QIDSVNLADS LRMMFESAQF KENFSLFQQL IVDGVFEMPS SSGAKLEDIR  360
AFKKLALSDF NKSRLVESYN HLKEREKGTG DSVTTTTSRS SLNPNVPKTI VTIKKHCENQ  420
TQLKSESRGL MRSPKSVTKM KASDESKVLT ENNGSCFSPR SLASVFAQES GGITLFGNEN  480
NCSSDQDLLL MDLPSNGSFP QAELLHQL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013605663.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2367910.0AC236791.1 Brassica napus clone JBr38I20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605663.10.0PREDICTED: GATA transcription factor 26-like
RefseqXP_013738319.10.0GATA transcription factor 26-like
SwissprotQ8W4H10.0GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A0D3DMI30.0A0A0D3DMI3_BRAOL; Uncharacterized protein
TrEMBLQ2A9H00.0Q2A9H0_BRAOL; GATA zinc finger containing protein
STRINGBo8g049560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.30.0GATA transcription factor 26