PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013605632.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 719aa    MW: 79223.4 Da    PI: 5.6152
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013605632.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1966122157
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+  qVk+WFqN+R+++k+
  XP_013605632.1  66 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 122
                     688999************************************************995 PP
2START217.83.6e-682534662206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                     la +a++el+++++++ep+W +++  ++++e+ ++f+++ +     +++ea+r+s+vv+m++   ve+l+d++ qW+  +a    +a+tl+v+s+
  XP_013605632.1 253 LAVAAMEELMRMVQVDEPLWNSLV--LDEEEYARTFPRGIGpkpagFRSEASRESAVVIMNHISIVEILMDVN-QWSMVFAgmvsRAMTLAVLST 344
                     6789********************..************999********************************.********************* PP

                     T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
           START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                     g      galq+m+ae+q+++plvp R+ +f+Ry++q+ +g+w++vd+S+ds q++p     vR++++ Sg+li++++ng+skvtwvehv++++r
  XP_013605632.1 345 GvagnynGALQVMTAEFQVPTPLVPtRETYFARYCKQQADGSWAVVDISLDSLQPNPP----VRCRRRASGCLIQEMPNGYSKVTWVEHVEVDDR 435
                     *********************************************************8....********************************* PP

                     XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                      +h l++++v++g+a+gak+wva l+rqce+
  XP_013605632.1 436 GVHDLYKHMVSTGHAFGAKRWVAILDRQCER 466
                     *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-2244121IPR009057Homeodomain-like
SuperFamilySSF466893.72E-1954123IPR009057Homeodomain-like
PROSITE profilePS5007116.47163123IPR001356Homeobox domain
SMARTSM003891.6E-1864127IPR001356Homeobox domain
PfamPF000463.2E-1766121IPR001356Homeobox domain
CDDcd000867.92E-1966124No hitNo description
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PROSITE profilePS5084842.54243469IPR002913START domain
SuperFamilySSF559611.26E-32244468No hitNo description
CDDcd088751.05E-122247465No hitNo description
SMARTSM002342.1E-61252466IPR002913START domain
PfamPF018521.7E-60253466IPR002913START domain
Gene3DG3DSA:3.30.530.206.0E-5342432IPR023393START-like domain
SuperFamilySSF559612.14E-25485711No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MFEPNMLLAA MNNEDSNNHN YNHEVNNNNE GFLRDDEFDS ANTKSGSENQ EGGSGNDQDP  60
HHPNKKKRYH RHTQLQIQEM EAFFKECPHP DDKQRKQLSR ELGLEPLQVK FWFQNKRTQM  120
KNHHERHENS HLRAENEKLR GDNLRYREAL ANASCPNCGG PTAIGEMSFD EHQLRLENSR  180
LREEIDRISA IAAKYVGKPV SNYPLMSPPP LPPRPLELAM GNFGGDVYGN NPTDQFKSII  240
APTESDKPVI IDLAVAAMEE LMRMVQVDEP LWNSLVLDEE EYARTFPRGI GPKPAGFRSE  300
ASRESAVVIM NHISIVEILM DVNQWSMVFA GMVSRAMTLA VLSTGVAGNY NGALQVMTAE  360
FQVPTPLVPT RETYFARYCK QQADGSWAVV DISLDSLQPN PPVRCRRRAS GCLIQEMPNG  420
YSKVTWVEHV EVDDRGVHDL YKHMVSTGHA FGAKRWVAIL DRQCERLASV MATNISSGEV  480
GVITNQEGRR SMLKLAERMV ISFCAGVSAS TAHTWTTLSG TGAEDVRVMT RKSVDDPGRP  540
PGIVLSAATS FGIPVPPKRV FDFLRDENSR NEWDILSNGG VVQEMAHIAN GRDTGNCVSL  600
LRVNSANSSQ SNMLILQESC TDPTASFVIY APVDIVAMNI VLNGGDPDYV ALLPSGFAIL  660
PDGNANGGGE GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN NLIACTVERI KASMSCETA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013605632.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167760.0AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605632.10.0PREDICTED: homeobox-leucine zipper protein HDG2
RefseqXP_013605633.10.0PREDICTED: homeobox-leucine zipper protein HDG2
RefseqXP_013605634.10.0PREDICTED: homeobox-leucine zipper protein HDG2
RefseqXP_013605635.10.0PREDICTED: homeobox-leucine zipper protein HDG2
RefseqXP_013605636.10.0PREDICTED: homeobox-leucine zipper protein HDG2
RefseqXP_013605637.10.0PREDICTED: homeobox-leucine zipper protein HDG2
RefseqXP_013605638.10.0PREDICTED: homeobox-leucine zipper protein HDG2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0D3DYX80.0A0A0D3DYX8_BRAOL; Uncharacterized protein
STRINGBo8g115250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2