PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013605422.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 313aa    MW: 34669.3 Da    PI: 5.0841
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013605422.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.4e-1161101345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++T+eE++l+++ ++ +G++ W +Ia++++ g+t++++k  w+
   XP_013605422.1  61 SFTPEEEDLIIKMHAAMGSR-WPLIAQHLP-GKTEEEVKMVWN 101
                      79******************.*********.********8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.33E-1341112IPR009057Homeodomain-like
PROSITE profilePS5129415.53454108IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-1655108IPR009057Homeodomain-like
SMARTSM007171.3E-1058106IPR001005SANT/Myb domain
PfamPF002494.2E-1061102IPR001005SANT/Myb domain
CDDcd001671.65E-861104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVRSCSSKSK NPWTDEDNAS QKFAFASSSK NGSTPKKIGL RRCGKSCRVR KTDNAGAKHE  60
SFTPEEEDLI IKMHAAMGSR WPLIAQHLPG KTEEEVKMVW NSKLKKKLSQ MGIDHVTHRP  120
FSHVLAEYGN INGGGGGTLN PNPMNQTGSL GPNPSLNEDS HQQQQQQSND SGDLMFHLQA  180
IKLMTESSNQ VKPESTFMYA SSSSSNSSPP LFSSTCSTIA QENSEVNFTW SDFLLDQETF  240
NENQQNYPDQ ELDNLFGNEF SEAEAVATVA NTSAPDARIE EESLSNGFVE SIIAKEKELF  300
LGFPSYLDQP FHF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00148DAPTransfer from AT1G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013605422.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605422.10.0PREDICTED: transcription factor MYB35 isoform X2
RefseqXP_013728113.10.0transcription factor MYB35
TrEMBLA0A0D3DQA70.0A0A0D3DQA7_BRAOL; Uncharacterized protein
STRINGBo8g068210.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18960.11e-155MYB_related family protein