PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013605421.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 314aa MW: 34782.4 Da PI: 5.0841 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.5 | 2.1e-10 | 61 | 102 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T+eE++l+++ ++ +G++ W +Ia++++ g+t++++k w+ XP_013605421.1 61 SFTPEEEDLIIKMHAAMGSRLWPLIAQHLP-GKTEEEVKMVWN 102 79****************************.********8887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.74E-12 | 41 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.557 | 54 | 109 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-15 | 55 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-9 | 58 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-10 | 61 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.80E-9 | 61 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MVRSCSSKSK NPWTDEDNAS QKFAFASSSK NGSTPKKIGL RRCGKSCRVR KTDNAGAKHE 60 SFTPEEEDLI IKMHAAMGSR LWPLIAQHLP GKTEEEVKMV WNSKLKKKLS QMGIDHVTHR 120 PFSHVLAEYG NINGGGGGTL NPNPMNQTGS LGPNPSLNED SHQQQQQQSN DSGDLMFHLQ 180 AIKLMTESSN QVKPESTFMY ASSSSSNSSP PLFSSTCSTI AQENSEVNFT WSDFLLDQET 240 FNENQQNYPD QELDNLFGNE FSEAEAVATV ANTSAPDARI EEESLSNGFV ESIIAKEKEL 300 FLGFPSYLDQ PFHF |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00148 | DAP | Transfer from AT1G18960 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013605421.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013605421.1 | 0.0 | PREDICTED: transcription factor MYB35 isoform X1 | ||||
TrEMBL | A0A3P6FEI3 | 0.0 | A0A3P6FEI3_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g068210.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14822 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18960.1 | 1e-153 | MYB_related family protein |