PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013605404.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 324aa MW: 36782.8 Da PI: 9.6398

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013605404.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.7	3e-09	44	84	4	44
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKka +++Lee +L++ ++ XP_013605404.1 44 NKMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQE 84 6889*************************987777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0025	39	99	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-6	40	85	No hit	No description
PROSITE profile	PS50217	9.243	43	85	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.8E-5	44	90	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.9E-6	45	87	No hit	No description
PROSITE pattern	PS00036	0	48	63	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.1E-28	130	204	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MGMYEPFQQL SGWENTFNTI TTNNHNNNNQ TSSTIARTEA DANNKMKRRL AQNREAARKS 60 RLRKKAHVQQ LEESRLKLSQ LEQELVRARQ QGLCVTSDAT YLGPAGTMNT GIAAFEMEHK 120 HWLEEQSKRV SEIRTALQAH ISDVELKMLV DVCLNHYANL FRMKAAAAKA NVFFLISGMW 180 RTSTERFFQW IGGFRPSELL NVVMPYIEPL TDQQLLEVRN LQQSSQQAEE ALSQGLDKLQ 240 QGLVENIAVV ESLNHGGAQM ASAMENLESL EGFVNQADHL RKQSLQQMSK VLTTRQAARG 300 LLALGEYFHR LRALSSLWAA RPRN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bol.757	1e-168	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269\|PubMed:8003690, ECO:0000269\|PubMed:8628224}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269\|PubMed:12897257}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013605404.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU953106	0.0	EU953106.1 Zea mays clone 1383078 transcription factor TGA4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013605404.1	0.0	PREDICTED: transcription factor TGA3-like isoform X2
Swissprot	Q39234	0.0	TGA3_ARATH; Transcription factor TGA3
TrEMBL	A0A3P6GI62	0.0	A0A3P6GI62_BRAOL; Uncharacterized protein
STRING	Bo8g071300.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22070.1	1e-180	TGA1A-related gene 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7. PLoS ONE, 2013. 8(12): p. e82032 [PMID:24324742] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Fang H, et al. The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis. Plant J., 2017. 91(6): p. 1038-1050 [PMID:28670772] Sarkar S, et al. Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta. Planta, 2018. 247(1): p. 181-199 [PMID:28913593]