PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013605403.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 353aa    MW: 39938 Da    PI: 8.1114
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013605403.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.91.2e-0973113444
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                     +k  rr+++NReAAr+sR+RKka +++Lee   +L++  ++
  XP_013605403.1  73 DKMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQE 113
                     7999*************************987777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.001970128IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-772114No hitNo description
PROSITE profilePS502179.34772114IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-674116No hitNo description
PfamPF077162.0E-574119IPR004827Basic-leucine zipper domain
PROSITE patternPS0003607792IPR004827Basic-leucine zipper domain
PfamPF141442.4E-28159233IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGMYEPFQQL SGWENTFNTI TTNNHNNNNQ TSSTIARTEA DANNKGNYTC LYNNSVEAEP  60
SGNNDQGEVQ INDKMKRRLA QNREAARKSR LRKKAHVQQL EESRLKLSQL EQELVRARQQ  120
GLCVTSDATY LGPAGTMNTG IAAFEMEHKH WLEEQSKRVS EIRTALQAHI SDVELKMLVD  180
VCLNHYANLF RMKAAAAKAN VFFLISGMWR TSTERFFQWI GGFRPSELLN VVMPYIEPLT  240
DQQLLEVRNL QQSSQQAEEA LSQGLDKLQQ GLVENIAVVE SLNHGGAQMA SAMENLESLE  300
GFVNQADHLR KQSLQQMSKV LTTRQAARGL LALGEYFHRL RALSSLWAAR PRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.7570.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:8003690, ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013605403.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9531060.0EU953106.1 Zea mays clone 1383078 transcription factor TGA4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605403.10.0PREDICTED: transcription factor TGA3-like isoform X1
SwissprotQ392340.0TGA3_ARATH; Transcription factor TGA3
TrEMBLA0A3P6GI620.0A0A3P6GI62_BRAOL; Uncharacterized protein
STRINGBo8g071300.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22070.10.0TGA1A-related gene 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D
    The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7.
    PLoS ONE, 2013. 8(12): p. e82032
    [PMID:24324742]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Fang H, et al.
    The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis.
    Plant J., 2017. 91(6): p. 1038-1050
    [PMID:28670772]
  5. Sarkar S, et al.
    Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta.
    Planta, 2018. 247(1): p. 181-199
    [PMID:28913593]