PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013605348.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 605aa MW: 67169.2 Da PI: 6.7989 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.9 | 9.6e-10 | 417 | 454 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps +++ LA+++gL+ +qV++WF N R + XP_013605348.1 417 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 454 665569******************************88 PP | |||||||
2 | BELL | 121.6 | 3.3e-39 | 275 | 346 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+leeVd+rY++y+eq+q++++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda++ q+ XP_013605348.1 275 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMIVNSFDQVMGYGAAIPYTTLAQKAMSRHFRCLKDAVVVQL 346 589*****************************************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.2E-81 | 208 | 344 | IPR006563 | POX domain |
Pfam | PF07526 | 1.0E-50 | 214 | 342 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.86 | 395 | 458 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-9 | 398 | 462 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.53E-12 | 398 | 459 | No hit | No description |
SuperFamily | SSF46689 | 1.2E-17 | 399 | 465 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 401 | 464 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.7E-18 | 415 | 454 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 605 aa Download sequence Send to blast |
MSQDYHHNQG IFSFSNGFHR PSSSHQEEVE ESAVSGAPIP VYETAGMLSE MFSYPGGGSG 60 EILDHSTKQL LEQQNRHNNN STLHMLLPNH HQGYGYANEQ QQHHFTWPSS SDHQSQGDMI 120 GTVHVEGGKG LSLSLSSSLE AVAAAKAEEY RSIYCAAVDG TSSSSNASAH HQFNQFKTLL 180 LDNSTSHHQA VGHFGSSSSS PMVASSSIGG IYTLRNSKYT KPAQELLEEF CSVGRGHFKK 240 NKLSRNNSNP NTSGGGGSSS SPGVANDNPP LSPADRIEHQ RRKVKLLSML EEVDRRYNHY 300 CEQMQMIVNS FDQVMGYGAA IPYTTLAQKA MSRHFRCLKD AVVVQLKRSC ELLGEKETAG 360 AASSGLTKGE TPRLRLLEQS LRQQRAFHHM GMMEQEAWRP QRGLPERSVN ILRAWLFEHF 420 LNPYPSDADK HLLARQTGLS RNQVSNWFIN ARVRLWKPMV EEMYQQEAKE REEKGVEENQ 480 KEDYQQTNNS SNNSDTKPNE SNFTLVQTIT AQTPTTTMMT PTPHENDSSF LPSSVVTAAP 540 HNVSDSFTAA TCQQDVSDHF QVNDGVIRFG TKQAGDVSLT LGLRHTGNMP DNKNPSFSVR 600 DFGDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-15 | 404 | 462 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-15 | 404 | 462 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 1e-15 | 404 | 462 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 1e-15 | 404 | 462 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 1e-15 | 404 | 461 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-15 | 404 | 461 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013605348.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013605344.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Refseq | XP_013605345.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Refseq | XP_013605346.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Refseq | XP_013605348.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Swissprot | Q94KL5 | 0.0 | BLH4_ARATH; BEL1-like homeodomain protein 4 | ||||
TrEMBL | A0A0D3DVS8 | 0.0 | A0A0D3DVS8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FJY0 | 0.0 | A0A3P6FJY0_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g100290.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 0.0 | BEL1-like homeodomain 4 |
Publications ? help Back to Top | |||
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