PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013605344.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 605aa    MW: 67169.2 Da    PI: 6.7989
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013605344.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.6e-104174541954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   n+yps +++  LA+++gL+ +qV++WF N R +
  XP_013605344.1 417 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 454
                     665569******************************88 PP
2BELL121.63.3e-39275346172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +r e+q++k+kLls+leeVd+rY++y+eq+q++++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda++ q+
  XP_013605344.1 275 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMIVNSFDQVMGYGAAIPYTTLAQKAMSRHFRCLKDAVVVQL 346
                     589*****************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-81208344IPR006563POX domain
PfamPF075261.0E-50214342IPR006563POX domain
PROSITE profilePS5007112.86395458IPR001356Homeobox domain
SMARTSM003891.1E-9398462IPR001356Homeobox domain
CDDcd000861.53E-12398459No hitNo description
SuperFamilySSF466891.2E-17399465IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28401464IPR009057Homeodomain-like
PfamPF059202.7E-18415454IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MSQDYHHNQG IFSFSNGFHR PSSSHQEEVE ESAVSGAPIP VYETAGMLSE MFSYPGGGSG  60
EILDHSTKQL LEQQNRHNNN STLHMLLPNH HQGYGYANEQ QQHHFTWPSS SDHQSQGDMI  120
GTVHVEGGKG LSLSLSSSLE AVAAAKAEEY RSIYCAAVDG TSSSSNASAH HQFNQFKTLL  180
LDNSTSHHQA VGHFGSSSSS PMVASSSIGG IYTLRNSKYT KPAQELLEEF CSVGRGHFKK  240
NKLSRNNSNP NTSGGGGSSS SPGVANDNPP LSPADRIEHQ RRKVKLLSML EEVDRRYNHY  300
CEQMQMIVNS FDQVMGYGAA IPYTTLAQKA MSRHFRCLKD AVVVQLKRSC ELLGEKETAG  360
AASSGLTKGE TPRLRLLEQS LRQQRAFHHM GMMEQEAWRP QRGLPERSVN ILRAWLFEHF  420
LNPYPSDADK HLLARQTGLS RNQVSNWFIN ARVRLWKPMV EEMYQQEAKE REEKGVEENQ  480
KEDYQQTNNS SNNSDTKPNE SNFTLVQTIT AQTPTTTMMT PTPHENDSSF LPSSVVTAAP  540
HNVSDSFTAA TCQQDVSDHF QVNDGVIRFG TKQAGDVSLT LGLRHTGNMP DNKNPSFSVR  600
DFGDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15404462563Homeobox protein Meis2
3k2a_B1e-15404462563Homeobox protein Meis2
4xrm_A1e-15404462563Homeobox protein Meis2
4xrm_B1e-15404462563Homeobox protein Meis2
4xrs_A1e-15404461158Homeobox protein Meis1
4xrs_B1e-15404461158Homeobox protein Meis1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013605344.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605344.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_013605345.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_013605346.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_013605348.10.0PREDICTED: BEL1-like homeodomain protein 4
SwissprotQ94KL50.0BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLA0A0D3DVS80.0A0A0D3DVS8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FJY00.0A0A3P6FJY0_BRAOL; Uncharacterized protein
STRINGBo8g100290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.30.0BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]