PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013605287.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 496aa MW: 55532.3 Da PI: 6.3879 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.1 | 8.2e-07 | 242 | 263 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_013605287.1 242 FCTICGKGFKRDANLRMHMRGH 263 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.17E-5 | 239 | 266 | No hit | No description |
SMART | SM00355 | 0.0026 | 241 | 263 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.03 | 241 | 268 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.0E-6 | 242 | 294 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 243 | 263 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 50 | 292 | 325 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 45 | 330 | 352 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
METEDDLCKN NWGGASSSSS SKRREQVCFT SQHKWEDASI LDYEMGMEEE PAFQENSNNN 60 NGGQVNVDFL QGVRAQAWDP RTMLSNLSFM EEKIHELQDL VHLMVRRNGQ LQGRQEQLVA 120 HQQQLITTDL TSIIIQLIST AGSLLPSVKH HNMSTAPGPF TGSALFPYPR EANNLASQTL 180 NNNTCEFDLP KPIVVEERES HVVEEHEMKD EDDVEEGENL LPGSYEILQL EKEEILAPHT 240 HFCTICGKGF KRDANLRMHM RGHGDEYKTP AALAKPNKEA APGSEPMLIK RYSCPFPGCK 300 RNKDHKKFQP LKTILCVKNH YKRTHCDKSF TCSRCHTKKF SVIADLKTHE KHCGKNKWLC 360 SCGTTFSRKD KLFGHIALFQ GHTPAIPLEE TKPSAQRGSS ACENSNNNNN TGMVGFNLGS 420 ATNAIEEVAQ PGFMDGKIRF EDSFSPLSFD TCNFGGFHEF PRPMFDDSES SFQMLISSAC 480 GFSPRNGGES VSNTSL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bol.13806 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots (e.g. root tips and lateral roots), leaves, flowers (e.g. stigma, sepal, anther, and filament), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013605287.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232513 | 0.0 | AC232513.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065E07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013605287.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Swissprot | Q9C8N5 | 0.0 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A0D3DKL1 | 0.0 | A0A0D3DKL1_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g027000.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6977 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 0.0 | C2H2 family protein |