PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013605280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 662aa MW: 73478.6 Da PI: 6.3523 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.8 | 7.5e-22 | 124 | 225 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+++ +++ ++l+ +d+++++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + + XP_013605280.1 124 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHNNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 214 99****************************964333..4459************************************************..348 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+v+r+ XP_013605280.1 215 NEELRVGVRRH 225 8889****996 PP | |||||||
2 | Auxin_resp | 112.4 | 4.4e-37 | 250 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++t+++F+v+Y+Pr+s+seF+v+v+++++a ++k++vGmRfkm+fe+e+++e+r+sGt+vgv++ +++ W++S+WrsLk XP_013605280.1 250 AAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKNQKLAVGMRFKMRFEGEEAPEKRFSGTIVGVQENKSSVWHDSEWRSLK 332 79*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.86E-44 | 113 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-40 | 121 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.86E-19 | 122 | 224 | No hit | No description |
Pfam | PF02362 | 1.1E-19 | 124 | 225 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-21 | 124 | 226 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.588 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.0E-34 | 250 | 332 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 8.1E-6 | 532 | 575 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 30.558 | 539 | 632 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.63E-11 | 541 | 616 | No hit | No description |
Pfam | PF02309 | 3.4E-6 | 579 | 629 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MAASNHPSGK PGGALSDALC RELWHACAGP LITLPREGER VYYFPEGHME QLEASMHQGL 60 EQQMPSFNLP SKILCKVINI QRKAEPETDE VYAQITLLPE ADQSEPMSPD APVQEPEKCT 120 VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NNEWHFRHIF 180 RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH 240 SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKNQKLAV GMRFKMRFEG 300 EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANNT 360 LSAHLPPQRN KRPRPPGLLS PTTAPSTPDG VWKSPADNPS SVPLFSPPAK TAALGLGGNK 420 SFGVSIGSAF WPTHADGAAE SFASALNNES PTEKKQTNGN VCRLFGFELV ENMNVDECFS 480 AASVSGAVAV DQPVPSNEFD SGQQSESLNI NQANLPSGSG DHEKSSLRSP QESQSRQIRS 540 CTKVHMQGSA VGRAVDLTRS ECYEDLFKKL EEMFDIKGEL LESTKKWQVV YTDDEDDMMM 600 VGDDPWNEFC GMVRKIFIYT PEEVKKLSPK NKLTVNVRMQ PKTDADENGN TEGRSSSMAG 660 SR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 1 | 355 | 1 | 355 | Auxin response factor 1 |
4ldw_A | 0.0 | 1 | 355 | 1 | 355 | Auxin response factor 1 |
4ldw_B | 0.0 | 1 | 355 | 1 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 370 | 374 | KRPRP |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. {ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013605280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979458 | 0.0 | JN979458.1 Brassica rapa subsp. pekinensis auxin response factor 1 (ARF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013605280.1 | 0.0 | PREDICTED: auxin response factor 1 isoform X2 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | A0A0D3AA64 | 0.0 | A0A0D3AA64_BRAOL; Auxin response factor | ||||
STRING | Bo1g090350.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.2 | 0.0 | auxin response factor 1 |
Publications ? help Back to Top | |||
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