PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013605050.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 278aa MW: 30842.8 Da PI: 9.6253

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013605050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.9	7e-16	207	250	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 ++++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+k+ XP_013605050.1 207 RKQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENERLRKQ 250 689***************************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.7E-14	200	250	No hit	No description
SMART	SM00338	1.5E-12	203	276	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.335	205	250	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.0E-13	207	250	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.75E-22	207	261	No hit	No description
SuperFamily	SSF57959	1.38E-10	207	252	No hit	No description
PROSITE pattern	PS00036	0	210	225	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MDSQREPRSH QSLNRQGSLY GLTLDEVQTH LGSSGKALGS MNLDELLKSV CSVEGNQPSS 60 LAAHEGLSRQ GSLTLPRDLS QKTVEEVWKD IQQEKNGGGS GHERRDKQPT LGEMTLEDLL 120 LKAGVVTETV PGNGSAGMEQ NIAQVAPWVQ YHQLPSMPQP QSFMPYPVAD MQAMVSQSSL 180 MGGLSDTQTP GRKRVASGEV VEKTVERKQK RMIKNRESAA RSRARKQAYT HELEIKVSRL 240 EEENERLRKQ KEVEKILPSA PPPLDPKRQL RRTSSAPF

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013605050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX122899	0.0	JX122899.1 Brassica napus ABA-responsive element binding factor AREB3.2 (AREB3.2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013605050.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-171	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0D3DTR3	0.0	A0A0D3DTR3_BRAOL; Uncharacterized protein
STRING	Bo8g091160.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-174	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]