PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013604907.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 333aa MW: 37407.7 Da PI: 5.1747 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.7e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +v+++G g W+t +++ g++R++k+c++rw +yl XP_013604907.1 15 KGAWTPEEDQKLVSYVNRHGEGGWRTLPEKAGLKRCGKSCRLRWANYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.5e-16 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T++E+ ++ +++++G++ W++Iar ++ gRt++++k++w+++ XP_013604907.1 68 RGEFTEDEECSIISLHALHGNK-WAAIARGLP-GRTDNEIKNHWNTH 112 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.778 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.13E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.16E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.807 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 9.1E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.19E-11 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-25 | 70 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009625 | Biological Process | response to insect | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009682 | Biological Process | induced systemic resistance | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009759 | Biological Process | indole glucosinolate biosynthetic process | ||||
GO:0052544 | Biological Process | defense response by callose deposition in cell wall | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MVRTPCCKAE LGLKKGAWTP EEDQKLVSYV NRHGEGGWRT LPEKAGLKRC GKSCRLRWAN 60 YLRPDIKRGE FTEDEECSII SLHALHGNKW AAIARGLPGR TDNEIKNHWN THIKKRLIKK 120 GVDPVTHKSL ISDKSENFPE IPEKQNVIQT IITSEDDLDN EKVKNSNKKP VLSSAKFLNR 180 VANRFGKRIN QSVLSEIIGS GGPLTTTTTS HTATTTSVTV NSESDKSTSS SFTPTSDLLC 240 QMTVNGNATS SPSTFSDASV NDSLMYCDNE DNLGFSNFLN DEDFMMLEES CVDNTEFMKE 300 LSRFLEEDVN DDVEVMHVYE HQDNIEDIDN YFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in vegetative parts of the plant, mainly in mature rosette leaves and in trichomes. Detected in roots, but not in mature flowers or siliques. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23115560}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor positively regulating indolic glucosinolate biosynthetic pathway genes. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00147 | DAP | Transfer from AT1G18570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013604907.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by touch or wounding. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23115560}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ670119 | 0.0 | KJ670119.1 Brassica napus MYB transcription factor 51 (MYB51.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013604907.1 | 0.0 | PREDICTED: transcription factor MYB51-like | ||||
Refseq | XP_013727091.1 | 0.0 | transcription factor MYB51 | ||||
Swissprot | O49782 | 1e-161 | MYB51_ARATH; Transcription factor MYB51 | ||||
TrEMBL | A0A0D3DQ77 | 0.0 | A0A0D3DQ77_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FEN2 | 0.0 | A0A3P6FEN2_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g067910.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18570.1 | 1e-154 | myb domain protein 51 |