PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013604894.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 258aa    MW: 29359.8 Da    PI: 7.5706
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013604894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.41.3e-20180214135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C ttkTp+WR+gp+g+ktLCnaCG+++r+ +l
  XP_013604894.1 180 CTHCETTKTPQWREGPNGPKTLCNACGVRFRSGRL 214
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.55E-16173236No hitNo description
SMARTSM004013.0E-20174224IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-15178211IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.084178210IPR000679Zinc finger, GATA-type
CDDcd002029.55E-18179228No hitNo description
PfamPF003202.1E-18180214IPR000679Zinc finger, GATA-type
PROSITE patternPS003440180205IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MNWLPEEEFN DSFFDDLINQ INFPLEDTTT NGEGEDWESK FQHLEPPPMD LFTTFPSEFT  60
SSHVINKEVA PVPVLKQSSS PSPPDVKVSK LFQSSSPVSV LESSDASFSP QNLISQCLAF  120
PVKGMRSKRK RPTAQRLRFL YPFEASKPEA YYSSEQHAKK QRKTSHTEAS SYDDGIVRRC  180
THCETTKTPQ WREGPNGPKT LCNACGVRFR SGRLVPEYRP ASSPTFIPSL HSNSHRKIIE  240
MRRKEGDEFD NSMIHSRA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013604894.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604894.10.0PREDICTED: GATA transcription factor 11-like
SwissprotQ6DBP81e-113GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A0D3DYH30.0A0A0D3DYH3_BRAOL; Uncharacterized protein
STRINGBo8g112710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-104GATA transcription factor 11