PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013604810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | BES1 | ||||||||
Protein Properties | Length: 337aa MW: 36634.7 Da PI: 9.5428 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 201.2 | 3.2e-62 | 17 | 157 | 2 | 145 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspesslq 95 +++rkp+w+ErEnn+rRERrRRa+aakiy+GLRaqGny+lpk++DnneVlkALc eAGwvve+DGttyrkg kp+ ++agss++a+p ss++ XP_013604810.1 17 ATRRKPSWRERENNRRRERRRRAVAAKIYTGLRAQGNYNLPKHCDNNEVLKALCSEAGWVVEEDGTTYRKGHKPPsLPGDVAGSSSRATPYSSYN 111 789************************************************************************8899**************99 PP DUF822 96 sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145 s ++sp+ sy+ sp+sssfpsps+ ++++ ++++p+l++ + XP_013604810.1 112 ----QSPFESPILSYQVSPSSSSFPSPSRGGGDTHNNISTIFPFLRNGGI 157 ....889**********************999988888999999998864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 6.2E-59 | 18 | 139 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MTSDGATSTS AAAAMAATRR KPSWRERENN RRRERRRRAV AAKIYTGLRA QGNYNLPKHC 60 DNNEVLKALC SEAGWVVEED GTTYRKGHKP PSLPGDVAGS SSRATPYSSY NQSPFESPIL 120 SYQVSPSSSS FPSPSRGGGD THNNISTIFP FLRNGGIPSS LPPLRISNSA PVTPPVSSPS 180 SKHTKALPTW GECFTNQSMA IAAKQSMSSF NYPFYAVSAP ASPTHHRQFN APPATIPECD 240 ESDASTVDSG HWISFQKFSQ QQPFLGVSAV PASPTFNLVR PPVPQQLSPN TAATQEIGQS 300 SEFKFENRQV KPWEGERIHD VAMEDLELTL GNAKGRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 4e-34 | 19 | 103 | 371 | 453 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 4e-34 | 19 | 103 | 371 | 453 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 4e-34 | 19 | 103 | 371 | 453 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 4e-34 | 19 | 103 | 371 | 453 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 37 | RRKPSWRERENNRRRERRRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitously expressed in cotyledons, leaves, hypocotyls and roots. {ECO:0000269|PubMed:12007405}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid (BR) signaling. Transcription factor that activates target gene expression by binding specifically to the DNA sequence 5'-CANNTG-3'(E box) through its N-terminal domain. Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BIM1, BIM2 or BIM3. The C-terminal domain is probably involved in transcriptional activation (PubMed:12007405, PubMed:15680330, PubMed:18467490, PubMed:19170933). Recruits the transcription elongation factor IWS1 to control BR-regulated gene expression (PubMed:20139304). Forms a trimeric complex with IWS1 and ASHH2/SDG8 to regulate BR-regulated gene expression (PubMed:24838002). Promotes quiescent center (QC) self-renewal by cell divisions in the primary root. Binds to the E-boxes of the BRAVO promoter to repress its expression (PubMed:24981610). {ECO:0000269|PubMed:12007405, ECO:0000269|PubMed:15680330, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20139304, ECO:0000269|PubMed:24838002, ECO:0000269|PubMed:24981610}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00073 | ChIP-chip | Transfer from AT1G19350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013604810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013604810.1 | 0.0 | PREDICTED: protein BRASSINAZOLE-RESISTANT 2-like | ||||
Swissprot | Q9LN63 | 1e-176 | BZR2_ARATH; Protein BRASSINAZOLE-RESISTANT 2 | ||||
TrEMBL | A0A0D3DQD5 | 0.0 | A0A0D3DQD5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FTK2 | 0.0 | A0A3P6FTK2_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g068490.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2472 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.3 | 1e-156 | BES1 family protein |