PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013604775.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 966aa    MW: 107276 Da    PI: 6.4318
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013604775.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.81.1e-28640690252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++
  XP_013604775.1 640 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 690
                     799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.041629710IPR003035RWP-RK domain
PfamPF020421.1E-24643690IPR003035RWP-RK domain
SuperFamilySSF542772.24E-23858950No hitNo description
Gene3DG3DSA:3.10.20.2401.2E-22861947No hitNo description
SMARTSM006665.5E-27863948IPR000270PB1 domain
PROSITE profilePS5174528.666863948IPR000270PB1 domain
PfamPF005643.0E-18865947IPR000270PB1 domain
CDDcd064073.65E-40865947No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 966 aa     Download sequence    Send to blast
MEGSGGGDGG FLPNPSFGAF PETAMDMDFM EELFFDGCWL ETTDGKSLKQ TSGQQAPSST  60
NMNDNNNNNS FLYGYQFAEN PSQDHISNED TGRKLPPGFL KMEDLTNQPM TIVPFDQSAA  120
MSSAQAEKFL LEETERGRRY WIAPRTSQGP SSSVKDRLFQ AINGLKVQDK DFLIQIWVPI  180
QQEGKNFLTT LEQPHFFNPK YKSLKRYRDV SVSYNFLADE DSKESVGLPG RVFLGKLPEW  240
TPDVRFFRSE EYPRIKEAQR CDVRGSLALP VFESGSGICL GVVEIVTTTQ KMNYRPELEN  300
ICKALEAVNL RSSANMESPS SEFRQVYKQF YCAVMPEVSV FLTSVCRSYD LPLALTWAPC  360
ARQGRGGSRH SDENFSECVS TLDSACFVLD QQSHNFQEAC SEHHLLQGEG IVGKAFKATK  420
LFFVPEVTTF SKTNYPLAHH AKISGLHAAL AVPLKNKFNG SVEFVLEFFF PKSCLDTEAQ  480
QKMLKSLSVT LQQDFRSLNL VIDKEMELEV VFPVREELLF SGNAETGESL KPLPLEEISQ  540
EDSSWISHMI NANEKGKGVS LSWEYQKEEP KEEFMLTSGW DNNNNQIGSF LSDAEQFQKA  600
SNSGGLRLDI DPSFDSASFG VGQTLLGSRR PGEKRRTKTE KTIGLEVLRQ YFAGSLKDAA  660
KSIGVCPTTL KRICRQHGIT RWPSRKIKKV GHSLKKLQLV IDSVQGVQGS IQLDSFYTSF  720
PELSSPNNVS STGTGTSFRN NDQPSHLNPQ TENGVSPAVA PTSSPPSSSC SHSSGSSTCC  780
STGANQSTNT ANTSNTISTL MADNAGAILK RARSEVRLRT VNQEETKSLS RTLSHRAFSE  840
HPLLNNLPRL PESRSRSLKA GGASKVKATF GEAKVRFTLL PTWGFRELQH EIARRFNIDN  900
NIIATFDLKY LDDDKEWVLL TCEADLEECI DIYRSSQSRT IKISVHEASQ AKLGGSFGST  960
GPVPLL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013604775.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896560.0AC189656.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604758.10.0PREDICTED: protein NLP2
RefseqXP_013604767.10.0PREDICTED: protein NLP2
RefseqXP_013604775.10.0PREDICTED: protein NLP2
RefseqXP_013670582.10.0protein NLP2-like
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLA0A0D3A1T40.0A0A0D3A1T4_BRAOL; Uncharacterized protein
STRINGBo1g006600.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein