PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013604703.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C3H

Protein Properties

Length: 541aa MW: 59685.2 Da PI: 7.6439

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013604703.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.6e-08	228	248	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg XP_013604703.1 228 PCPEFRK-GSCPKGDSCEYAHG 248 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	2.64E-12	34	143	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0065	45	75	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	14.849	45	154	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.9E-14	46	155	IPR020683	Ankyrin repeat-containing domain
Pfam	PF13637	1.8E-5	47	98	No hit	No description
CDD	cd00204	1.98E-7	47	150	No hit	No description
SMART	SM00248	3.2	80	112	IPR002110	Ankyrin repeat
SMART	SM00248	860	116	151	IPR002110	Ankyrin repeat
PROSITE profile	PS50103	13.976	223	250	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.3E-5	223	249	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-5	228	248	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.1E-6	228	249	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.7E-4	255	287	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.812	258	282	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	43	258	281	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MGLLEYAACD DLPSFQREIE EKGLDLDEPG LWYCKKLGSN KMGLEQRTPL MVAAMYGSKK 60 VLSFIVSSGK SDVNRACGEE RVTALHCAVA GCSVNMVEVI NALLDASASA SAVDANGNHP 120 LDLFVRVSRF VASPRKKAVE MLLRGGGMIN EAVEEEEEVK IVSKYPADAS LPDINEGVYG 180 SDEFRMYSFK VKPCSRAYSH DWTECAFVHP GENARRRDPR KYPYTCVPCP EFRKGSCPKG 240 DSCEYAHGVF ESWLHPAQYK TRLCKDETGC ARKVCFFAHK REEMRPVNAS TGSALSQSPL 300 EMMPGLYSSG AATRPVSPMS SSVGSSPRNG GSWQNRVNSL SPPTLHLNGG SRLKSTLSAR 360 DMDMEMELEM RLRGFNNVEE TFGSYVSSPS RNSQMSHQHY PSSPVRQQQP PPHHFDSSAA 420 VAAAVMNARS SAFAKRSLSF KPQVASSPSN LSDWGSPSGK LDWGVQGDEL SKMRRSVSFG 480 IHGDNNGNNA GRDYRNEPDV SWVNSLVKDS VVSERGFGMN ERVRIMSWAE QMYREKEQTV 540 V

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MGLLEYAACD DLPSFQREIE EKGLDLDEPG LWYCKKLGSN KMGLEQRTPL MVAAMYGSKK  60
VLSFIVSSGK SDVNRACGEE RVTALHCAVA GCSVNMVEVI NALLDASASA SAVDANGNHP  120
LDLFVRVSRF VASPRKKAVE MLLRGGGMIN EAVEEEEEVK IVSKYPADAS LPDINEGVYG  180
SDEFRMYSFK VKPCSRAYSH DWTECAFVHP GENARRRDPR KYPYTCVPCP EFRKGSCPKG  240
DSCEYAHGVF ESWLHPAQYK TRLCKDETGC ARKVCFFAHK REEMRPVNAS TGSALSQSPL  300
EMMPGLYSSG AATRPVSPMS SSVGSSPRNG GSWQNRVNSL SPPTLHLNGG SRLKSTLSAR  360
DMDMEMELEM RLRGFNNVEE TFGSYVSSPS RNSQMSHQHY PSSPVRQQQP PPHHFDSSAA  420
VAAAVMNARS SAFAKRSLSF KPQVASSPSN LSDWGSPSGK LDWGVQGDEL SKMRRSVSFG  480
IHGDNNGNNA GRDYRNEPDV SWVNSLVKDS VVSERGFGMN ERVRIMSWAE QMYREKEQTV  540
V

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269\|PubMed:17609218}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269\|PubMed:17609218}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013604703.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress. {ECO:0000269\|PubMed:17609218}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013604703.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 47
Swissprot	Q93ZS9	0.0	C3H47_ARATH; Zinc finger CCCH domain-containing protein 47
TrEMBL	A0A0D3DTI4	0.0	A0A0D3DTI4_BRAOL; Uncharacterized protein
STRING	Bo8g090370.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM877	26	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55980.1	0.0	salt-inducible zinc finger 1

Publications ? help Back to Top
LeBlanc M,Kim G,Patel B,Stromberg V,Westwood J Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona. New Phytol., 2013. 200(4): p. 1225-33 [PMID:23914903] Liang Y,Gao Y,Jones AM Extra Large G-Protein Interactome Reveals Multiple Stress Response Function and Partner-Dependent XLG Subcellular Localization. Front Plant Sci, 2017. 8: p. 1015 [PMID:28659958]