PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013604572.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 1281aa MW: 141475 Da PI: 6.9962 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.5 | 3.7e-06 | 1260 | 1281 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ f+++G+Ck G+ C+F H+ XP_013604572.1 1260 KICK-FYESGYCKKGAACSFWHP 1281 6899.8999***********997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 5.0E-7 | 79 | 141 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 2.1E-7 | 82 | 140 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE profile | PS50016 | 8.582 | 86 | 152 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 1.6E-6 | 88 | 134 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15568 | 9.28E-19 | 88 | 133 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 89 | 149 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00151 | 3.5E-4 | 292 | 382 | IPR019835 | SWIB domain |
SuperFamily | SSF47592 | 7.63E-22 | 301 | 378 | IPR003121 | SWIB/MDM2 domain |
Gene3D | G3DSA:1.10.245.10 | 5.5E-24 | 302 | 382 | IPR003121 | SWIB/MDM2 domain |
Pfam | PF02201 | 9.0E-15 | 306 | 377 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00719 | 1.3E-45 | 436 | 546 | IPR004343 | Plus-3 domain |
PROSITE profile | PS51360 | 18.057 | 436 | 569 | IPR004343 | Plus-3 domain |
SuperFamily | SSF159042 | 4.45E-25 | 437 | 560 | IPR004343 | Plus-3 domain |
Pfam | PF03126 | 3.4E-17 | 441 | 544 | IPR004343 | Plus-3 domain |
SuperFamily | SSF55277 | 1.44E-15 | 705 | 761 | IPR003169 | GYF domain |
CDD | cd00072 | 5.25E-18 | 708 | 765 | No hit | No description |
PROSITE profile | PS50829 | 15.192 | 708 | 762 | IPR003169 | GYF domain |
SMART | SM00444 | 4.2E-14 | 709 | 764 | IPR003169 | GYF domain |
Gene3D | G3DSA:3.30.1490.40 | 5.3E-16 | 710 | 762 | IPR003169 | GYF domain |
Pfam | PF02213 | 5.9E-11 | 710 | 754 | IPR003169 | GYF domain |
SuperFamily | SSF90229 | 1.12E-5 | 1256 | 1280 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.817 | 1256 | 1281 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-4 | 1260 | 1280 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1281 aa Download sequence Send to blast |
MENQQLQQVP GEESSVKGVV DLMRVDQCEE EIGASQAPSV PAPTVAGVVD EAAPVKRKRG 60 RPPRAHAKTV SQTRPPPPPR KDEKEEDVCF ICFDGGDLVL CDRRNCPKAY HPACIKRDEA 120 FFRTAAKWNC GWHICGTCQK GSSYMCYTCT FSVCKRCIKD ADYVIVRGNM GLCGTCIKPI 180 MLIENISQGD NEAVKVDFDD KLSWEYLFKV YWLCLKEELS LTVEELTRAN NPWKEVPYTV 240 PKVESRNIHT LSKACSSGNS DSDVVANGTK RRRTSDSPTV PSKLDTKIPS NIPKKLPGDT 300 NWATKELLEF LSVMRNGDTS VLSQFDVQGL LLDYIKKKNL RDPNQKSQVV CDQMLVKLFE 360 RQRVGHFEML KLLESHFLIQ EKPKEEKPKN GESSHSVRSQ TEEDSAHDPV VRDRKRKMRR 420 KTDGSEKNEN LDAYAAIDVH NINLIYLRRK FIDTLLDDIN KVHEKVVGTI LRIKVSGSDQ 480 KLDIYRLVQV VGTSKASAFY QLGAKTTDVM LEILNLDKRE VISIDQLSDQ NVTEDECKRL 540 RQSIKCGLNK RLTVGDILKI AATLQVMRVN EVLEADILKL RHLRDRASEK GRRKELRECV 600 EKLGRLESPE ERQRLLQEVP EVHTDPSMDP SHPSAEDAVL DNHIEVQSKS PKKKGDILNN 660 LGNNPQKKYD APVLRSRKAM HATNKEECSK VDNNSADIQQ TGKDDEESEI WHYRDPAGKT 720 QGPFSMVQLR KWKSCGHFPP YLRIWKEHEN QDESVLLTEA LAGRFDKATT LPSSSFHPQE 780 LKPSPHHSGR TGVDVNCLQN NLKPVSTSST SSSSSIVTAL PNDPKDKQVA TLVPCSGKVE 840 DGISVRPQPQ VSCPASMSVI PGHVVTPNVR ETSGTDQSSA VRPDGKTLED GANSGSVSIN 900 GSVHAPNLNQ EIHFRDFPSP TPKSSPEDLE AQAAETIQSL SSCVLVKGPS GVTWSTTATT 960 TVDAPTTTTT SSVVVTGGQL PQVTQQSAVD LAAPSVKHID LAADHATATH TSNNTHVAHS 1020 SGWPAIVADP DECDESVSDL LAEVEAMEQN GLPSSPTSTF HCDDDDDLMK GPEKDFFNPV 1080 LRMFLTHETC RMNVSQPSIL DYVSAGKSST GAEAQANTHF SHCGTAGPEL LLFAPPAPAS 1140 TSQDLTLTTT ALRLGSETTV EAGLVERPPK YASGVGLEPS LRSPSSHDPA RGNTERSPRG 1200 NGSQQRRSGG HSRDRQWWNN GHNNSLNNSH NNNRQWPYSS SHGYDHGSGS YTAHPPKGLK 1260 ICKFYESGYC KKGAACSFWH P |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4gnd_A | 1e-12 | 86 | 155 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gnd_C | 1e-12 | 86 | 155 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gne_A | 1e-12 | 86 | 155 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gnf_A | 1e-12 | 86 | 155 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gng_A | 1e-12 | 86 | 155 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gng_D | 1e-12 | 86 | 155 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013604572.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189508 | 0.0 | AC189508.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088I08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013604572.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X2 | ||||
Swissprot | Q9SD34 | 0.0 | C3H44_ARATH; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A0D3DSH9 | 0.0 | A0A0D3DSH9_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g081870.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G51120.1 | 0.0 | DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding |