PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013604571.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 1286aa    MW: 142045 Da    PI: 7.0997
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013604571.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.7e-0612651286426
                      ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                      ++C+ f+++G+Ck G+ C+F H+
  XP_013604571.1 1265 KICK-FYESGYCKKGAACSFWHP 1286
                      6899.8999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.105.0E-779141IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579032.06E-782140IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.58286152IPR019787Zinc finger, PHD-finger
SMARTSM002491.6E-688134IPR001965Zinc finger, PHD-type
CDDcd155689.33E-1988133No hitNo description
PROSITE patternPS01359089149IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001513.5E-4292382IPR019835SWIB domain
SuperFamilySSF475927.85E-22301378IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.105.5E-24302382IPR003121SWIB/MDM2 domain
PfamPF022019.1E-15306377IPR003121SWIB/MDM2 domain
SMARTSM007191.3E-45436546IPR004343Plus-3 domain
PROSITE profilePS5136018.057436569IPR004343Plus-3 domain
SuperFamilySSF1590424.45E-25437560IPR004343Plus-3 domain
PfamPF031263.5E-17441544IPR004343Plus-3 domain
SuperFamilySSF552771.44E-15710766IPR003169GYF domain
PROSITE profilePS5082915.192713767IPR003169GYF domain
CDDcd000725.28E-18713770No hitNo description
SMARTSM004444.2E-14714769IPR003169GYF domain
Gene3DG3DSA:3.30.1490.405.4E-16715767IPR003169GYF domain
PfamPF022135.9E-11715759IPR003169GYF domain
PROSITE profilePS5010313.81712611286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-512611285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-412651285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1286 aa     Download sequence    Send to blast
MENQQLQQVP GEESSVKGVV DLMRVDQCEE EIGASQAPSV PAPTVAGVVD EAAPVKRKRG  60
RPPRAHAKTV SQTRPPPPPR KDEKEEDVCF ICFDGGDLVL CDRRNCPKAY HPACIKRDEA  120
FFRTAAKWNC GWHICGTCQK GSSYMCYTCT FSVCKRCIKD ADYVIVRGNM GLCGTCIKPI  180
MLIENISQGD NEAVKVDFDD KLSWEYLFKV YWLCLKEELS LTVEELTRAN NPWKEVPYTV  240
PKVESRNIHT LSKACSSGNS DSDVVANGTK RRRTSDSPTV PSKLDTKIPS NIPKKLPGDT  300
NWATKELLEF LSVMRNGDTS VLSQFDVQGL LLDYIKKKNL RDPNQKSQVV CDQMLVKLFE  360
RQRVGHFEML KLLESHFLIQ EKPKEEKPKN GESSHSVRSQ TEEDSAHDPV VRDRKRKMRR  420
KTDGSEKNEN LDAYAAIDVH NINLIYLRRK FIDTLLDDIN KVHEKVVGTI LRIKVSGSDQ  480
KLDIYRLVQV VGTSKASAFY QLGAKTTDVM LEILNLDKRE VISIDQLSDQ NVTEDECKRL  540
RQSIKCGLNK RLTVGDILKI AATLQVMRVN EVLEADILKL RHLRDRASEK GRRKELRECV  600
EKLGRLESPE ERQRLLQEVP EVHTDPSMDP SHPSAEDAVL GMRKPDNHIE VQSKSPKKKG  660
DILNNLGNNP QKKYDAPVLR SRKAMHATNK EECSKVDNNS ADIQQTGKDD EESEIWHYRD  720
PAGKTQGPFS MVQLRKWKSC GHFPPYLRIW KEHENQDESV LLTEALAGRF DKATTLPSSS  780
FHPQELKPSP HHSGRTGVDV NCLQNNLKPV STSSTSSSSS IVTALPNDPK DKQVATLVPC  840
SGKVEDGISV RPQPQVSCPA SMSVIPGHVV TPNVRETSGT DQSSAVRPDG KTLEDGANSG  900
SVSINGSVHA PNLNQEIHFR DFPSPTPKSS PEDLEAQAAE TIQSLSSCVL VKGPSGVTWS  960
TTATTTVDAP TTTTTSSVVV TGGQLPQVTQ QSAVDLAAPS VKHIDLAADH ATATHTSNNT  1020
HVAHSSGWPA IVADPDECDE SVSDLLAEVE AMEQNGLPSS PTSTFHCDDD DDLMKGPEKD  1080
FFNPVLRMFL THETCRMNVS QPSILDYVSA GKSSTGAEAQ ANTHFSHCGT AGPELLLFAP  1140
PAPASTSQDL TLTTTALRLG SETTVEAGLV ERPPKYASGV GLEPSLRSPS SHDPARGNTE  1200
RSPRGNGSQQ RRSGGHSRDR QWWNNGHNNS LNNSHNNNRQ WPYSSSHGYD HGSGSYTAHP  1260
PKGLKICKFY ESGYCKKGAA CSFWHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A1e-12861551581Histone-lysine N-methyltransferase NSD3
4gnd_C1e-12861551581Histone-lysine N-methyltransferase NSD3
4gne_A1e-12861551581Histone-lysine N-methyltransferase NSD3
4gnf_A1e-12861551581Histone-lysine N-methyltransferase NSD3
4gng_A1e-12861551581Histone-lysine N-methyltransferase NSD3
4gng_D1e-12861551581Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013604571.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895080.0AC189508.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604571.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X1
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0D3DSH90.0A0A0D3DSH9_BRAOL; Uncharacterized protein
STRINGBo8g081870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding