PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013604348.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 292aa    MW: 31689.7 Da    PI: 6.7837
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013604348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.5e-343791155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  XP_013604348.1 37 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 91
                    79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.9383494IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-323493IPR009057Homeodomain-like
SuperFamilySSF466895.55E-173692IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-243792IPR006447Myb domain, plants
PfamPF002497.1E-83989IPR001005SANT/Myb domain
PfamPF143791.1E-26135181IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MYSAIRSLPL DGGDHHGPLD GTNLPGDACL VLTTDPKPRL RWTAELHERF VDAVTQLGGP  60
DKATPKTIMR TMGVKGLTLY HLKSHLQKFR LGRQACKDST DNSKDASCAG ESQDTGSSSS  120
SSLRMAAQEQ NEGYQVTEAL RAQMEVQRRL HEQLEVQRRL QLRIEAQGKY LQSILEKACK  180
AFDDQAAAFV GLEAAREELS ELAIKVSNSS QGTAVPFFDT TKMMMMPSVS ELAVAVDTKN  240
NITTNCSVES SLTSNTNGSS LSAASMKKRL RGDDVGLGYE AGWIMPSSST IG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-193793258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-193793258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-193793157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-193793157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-193793157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-193793157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-193793258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-193793258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-193793258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-193793258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-193793258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-193793258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013604348.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0503550.0AY050355.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds.
GenBankAY0884280.0AY088428.1 Arabidopsis thaliana clone 6626 mRNA, complete sequence.
GenBankAY0940460.0AY094046.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604348.10.0PREDICTED: myb family transcription factor APL-like isoform X2
SwissprotQ94A570.0PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A078IAJ50.0A0A078IAJ5_BRANA; BnaC01g30360D protein
STRINGBra028359.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.11e-161G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]